AMCG00002794 (LOC108416076,LOC108417123,LOC108417122,LOC107746757)


Basic Information

Item Value
gene id AMCG00002794
gene name LOC108416076,LOC108417123,LOC108417122,LOC107746757
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2768451 ~ 2776607 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002794
TGTCCACCTCACAGCTCCGGCGACCTTGTGTGCGACTCTTAGACAcaacagtgtttgtgtttcacgTCCCCTGAAAATGTCAATGCAATAAACATTAGCCTACATGTTATGGGAAGTGAGAGAGAGCGTCTGCTACACACTTCTCAAACCCATAATGACAAGCCAATACACACCGGCCCTGTATAATCTGAGTTATTGGTTTAGTTCAATACTGGTGCTGATCAATAGTCCCATTTGTCACAGTCTGTAAAAgtgaaatatgaatgtgaatTAGTTGAGTGATTGAGAGCACCTGTTTGAAGAGGAACCAGCAGACCCCGTGGGCCCCTCAGGACCGCAGTTTGACAGCCCGGAGCTTGAGGTTTAGAGAGGCTAGGAGCCGGGGTCATGTGATGTGGGTCTTAATTTAGCCTCTGGCAGGGGGGCGTGACGGGAGGCCTGTACCTCTGCAGCCTATCGTCTTTCAGCCAGTTCTCTCTCCCGGTTTAGTGACGAATCCGATCTTCCCTGGCGTTTGGGCTGGGAGGACTGACCTTGATGACATCCGTTaggattgtgtttttctgcatttgagTTCATTGTAAACCCTGAATTCAGCAGACGTCTCTCGGTGTCTGAACAGCGCGTCTTTTTAACAGACTTTGCAGATCTTGCAGTTACAGTTCCGTGGTGACAGCGGTGAAGATGCTGTCCTCCCTGAGCCGCAGAGTCTGCCGGGCCGCCCCAGCGCTGACCCGCGGGGTCCACTCCGGCTCCCGGCCGGCCTCCACTGCCGCCTCCTCGCTGAAGCGCACGGAGCGGCCCCTGACCTCGGAGGAGGTGTTCGCCCGCGAGGAGAAGTACGGCGCGCACAACTACCACCCGCTGCCTGTGGCCCTGGACCGTGGAGAAGGCGTCTACGTGTGGGACGTGGAGGGCCGCCGCTACTTCGACTTCCTGAGTGCCTACAGTGCCGTGAACCAGGGCCACTGCCACCCGGCCATCCTCTCCGCCCTGAACATCCAGGCCTCCCGGATCGCGCTGACCTCCCGCGCCTTCTACAACGACGTTCTGGGCGAGTACGAGCAGTACATCACCTCGCTGTTCGGCTACCACAAGGTCCTGCCCATGAACACAGGTACCTGCCGCCCCCTCACCGCGCTACCTGACCTCTTTAAATCCGCCCGGTGCCACGGCGTTGTCCCGGTAGGGGTATGGATACCGGAGACGCACGGTGTTGAAGCCGGAGAAACGGCTTGCAAACTGGCCCGGAAGTGGGCGTACACGGTGAAGGGCGTCCCGCGGTACAAAGCCAAGATCATCTTCGCCGTGGGGAACTTCTGGGGGCGGACATTAGCGGCCATCTCCAGCTCTACGGACCCCAGCAGCTACGAAGGCTTCGGCCCGTTCATGCCCGGCTTCGAGCTCATCCCTTACAACGACATCCCGGCCCTGGAGCGCGCCCTGCAGGACCAGAACGTCGCCGCGTTCATGGTGGAGCCGATCCAGGGGGAGGCGGGCGTGGTGGTCCCTGAGCCGGGATATCTGACCCGGGTGCGAGAGCTCTGCACCCAGCACAACGTGCTCTTTGTCGCCGATGAGATCCAGACGGGCCTGGCTCGGACTGGGCGGCGCTTAGCAGTGGACCATGAGGACGTGCGCCCCGACATCGTGCTGCTGGGCAAGGCGCTGTCTGGCGGGATGTACCCGGTGTCGGCTGTGCTCTGCGACGATGAGGTGATGCTGACCATCAAGCCTGGCGAACACGGCTCCACCTACGGGGGCAACCCACTGGCCTGCCGCGTCGCGATGGCGTCCCTGGAGgtcctggagaaggagaagcTGGCGGAGAACGCCGAGAAGATGGGCCGGCTGCTGCGCTCCGAGCTCATGAAGCTGCCCAGCGATGTGGTCACCACTGTGAGGGGGAAGGGCCTCCTCAACGCCATCGTCATCAAAGAGACTAAAGACTACGACGCCTGGAAGGTCTGCCTGCGTCTCCGAGACAACGGCCTGCTGGCCAAGCCCACCCACGGTGACATCATCAGGCTGGCCCCGCCCTTGGTGATCAAGGAAGACGAGATCCGGGAGTGCGTGGACATCCTCCAGAAGACCATCCTGTCCTTCTAGACTGGCCGGCTCCTCCCAGTGCCGCCGCAGCCAGCCAATCGCCAGCCCCTTCCAAAACcacctcttttctttttcttccatgtGCTGATTAAGTCAGGAATTTCCAGCAGATATGCAGCCCCACCCACAGCTCCTGCTCAGAAAATGTagcttgtgtttaaaaatgtgcgGAAAGCACTTAATTGCATTCTTTGGGGGAGGAGGAAATCTGATGAACCCAACAATTGGATCTTTACAGATTGAATTGATGAGTAAAGCTTGATACTCTTAAACTATCATTGTTTAACAGGTTTTCTTTCTCGGTGAAGTGAAGTCTGCTGAATGAAGACCCCTTTTTGCCATAAACAATTGGCAGCAACGAGGATTGTAGTTCCTAAACCGATCAACCTTTCGGTCGCCACGCGGTCACTGGACTGTAATCTATACCTCCTCCGTATTTGTTAAACCAGTCTAATGAAGAATCCTAATTGGCTTGTACAATCATTGAGGTCGGTTCCGGTGACCTGGAAGAGACCCTTGCTTGGTTTCGGGCGCGGCTCCAGCAGGGGGTGAAGGCGGGGTCTTCGTGGGGCTGCAGTGGATGCGGGGGTTGAGTTGGGTGGTCCGCCCCGGGCGTGTAGGCAGCTGCGTCTGTACCCGGGACTGGGAGATCAGGAATCTCTCTTTTCCTCGAATGTTTTTAGAGAGTGACCCGGCATTTAAAGACTGCATTCGTTCTGCAGAATTTGAGCCTCTTCATTTGGGCATCTGGTAGGGTTTGTGTGGTTTAATTTCAAGAAATGCCTGAAAGGGATAATATACTAATttctatattaaatacattaatttaattggcagagttatttatttgtagcaCTGGAGATGGATTGAGCTGTATTTTCTTAATGGTGTGATTAACCTCGGGGGGGGGAAATCTTCTAATAAATGTTTGGGAAATTT

Function

NR:

description
PREDICTED: ornithine aminotransferase, mitochondrial-like, partial

GO: NA

KEGG:

id description
K00819 rocD, OAT; ornithine--oxo-acid transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002794 True 3048 mRNA 0.56 10 2768451 2776607

Neighbor

gene id symbol gene type direction distance location
AMCG00002796 NA coding upstream 1478 2766758 ~ 2766973 (+)
AMCG00002795 NA coding upstream 3800 2762592 ~ 2764651 (+)
AMCG00002792 NA coding upstream 44673 2706965 ~ 2723778 (+)
AMCG00002793 NA coding upstream 63877 2694526 ~ 2704574 (+)
AMCG00002787 NA coding upstream 108443 2656030 ~ 2660008 (+)
AMCG00002800 LOC106512385,LOC106562767 coding downstream 88836 2865443 ~ 2885096 (+)
AMCG00002801 cpxm2 coding downstream 133346 2909953 ~ 2956770 (+)
AMCG00002803 NA coding downstream 270869 3047476 ~ 3051879 (+)
AMCG00002804 NA coding downstream 393736 3170343 ~ 3172461 (+)
AMCG00002810 NA coding downstream 418533 3195140 ~ 3198501 (+)
G138719 NA non-coding upstream 76611 2691429 ~ 2691840 (+)
G138712 NA non-coding upstream 100913 2665458 ~ 2667538 (+)
G138634 NA non-coding upstream 304815 2461638 ~ 2463636 (+)
G138593 NA non-coding upstream 707847 2060377 ~ 2060604 (+)
G138562 NA non-coding upstream 829326 1938147 ~ 1939125 (+)
G138816 NA non-coding downstream 396300 3172907 ~ 3177610 (+)
G138871 NA non-coding downstream 599639 3376246 ~ 3378027 (+)
G138903 NA non-coding downstream 950890 3727497 ~ 3727731 (+)
G138905 NA non-coding downstream 1148562 3925169 ~ 3928654 (+)
G138927 NA non-coding downstream 1213317 3989924 ~ 3990348 (+)
AMCG00002784 NA other upstream 273857 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 1358363 1406611 ~ 1410088 (+)
G138506 NA other upstream 1366022 1401289 ~ 1402429 (+)
G138476 NA other upstream 1670976 1095939 ~ 1097475 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other upstream 1675372 1089278 ~ 1093079 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other downstream 330851 3107458 ~ 3116081 (+)
G138888 grid1,LOC106607602 other downstream 652082 3428689 ~ 3596108 (+)
G138941 NA other downstream 1252917 4029524 ~ 4029924 (+)
G139176 NA other downstream 2320124 5096731 ~ 5098744 (+)
G139492 NA other downstream 3371141 6147748 ~ 6153120 (+)

Expression


Co-expression Network