AMCG00002800 (LOC106512385,LOC106562767)


Basic Information

Item Value
gene id AMCG00002800
gene name LOC106512385,LOC106562767
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2865443 ~ 2885096 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002800
ACTGGCCAGCCGTGATCAGCGAGGACGCAGTGGGGGAGATGCAGGTGCCTGGATCATCAGCAGCTATGTAAGATGAGGTTCAGCCCAGAGCGCAGAGAGCGTCTAAGAGCTCCACAACGCGAAGACTGAGGCTATGAGGACAAGCGAAGCGGGTCAGACGGGTCTGCGATCGCCACACCCATTCCGCAGAAGCCGCTGAATGGATGACGCAGCCCGGCCTGCCCAGCTCCCTCTCCAGCCCGCTGTGTCGCTCACGGGACGCCCCTGGGTTCGAGAGAGCGCCGCTGACCCACTCCTCTGCCCCACGATGACGCAGATGGACTATAACTACACGTTGCACAGCTCCAACCCCGAGGTATACAGGAAGAGGCCGTTCCTGCTTCAGGTGGACAAGGACAGCCAGATGAATTTATTCGCCGTCCTGGAACTCAGGCGGGACAACTACTGTCGCTGGAGCACGCTGGTGTGTTTCAGGAAAGTCAAACTGTACAGCATATTCTTCGGGGTGACCGTGATGTTTCTGATCATGGCCTCCTACATCCTGACTGCAGACAAGAAGGGACTCCTGCTGACCCCGTCCCCCTACCACTTCAGCAACCTCGGAAACAACCCCGGCTCCTTCCTGTTCAACCTGTCATCCGCCAGGGATTATGCAAATATTAAACTGGTCTTAAAAACGATAACGTCGAAGGTAGAATTCACCACCAGGGAACTGCCGGACTTGAAAGACCTGAAGAGAAACGAGCCACATATGTTTTCCGTAATCCCCCCGAAATTCCTTCCCAATGTTAAAAACCCATGCTGGTATGAGGAGTACTCGGGGAACATTACTGCTGACCCATATGGGGCAAACCTGTACGCACTTTACTCCAAGCGTTTGCGGACAGTGTTCGATTTCCTGAGAAATGCGTTCCGGGAACACTTGAATCACCATGTAAACAAGAACTATCGCATCCGCTGTCTGCCCTACTTCTACATCGTGGGCCAGCCGAAGTGTGGGACCACGGACCTGTACGACAGACTCCGGTTACACCCCGATGTGAGGTTTACTACCTTCAAGGAACCGCACTGGTGGACAAGGAAGAGGTTTGGTATCATTCGGCTGAGCGAGGGATTTCACGACCGATACCCAGTTGAGGATTACCTGGATCTCTTCGACCTGGCGGCCTTCCAGATCCAAGACCACTTGCTGGGGAACTCCTCCAGGAGCCAGCACAAGCGCAACATCATCATTGGGGAGGCGAGTGCGTCTACGATGTGGGACAACAACGCCTGGGTGTATTTCTACGACAACGCCACCAACGGGGAGCCACCCTTCCTCACCCAGGATTTTGTGCACGCGGTCCAGCCGGACGCCAAGTTCATTGTCATGCTGAGGGACCCGGTGGAGAGGCTGTACTCCGACTATCTGTACTTCGGCATTGCCAACAAGTCTGCGGAGGATTTCCACGAGAAAGTGTCGGAGTCCCTGCAGCTGTTCGAGGGGTGCCTGCTGGAGTTCTCGATGCGCTCCTGTGTGTACAACACCACCCTGAACAACGCCATGCCTGTCAGACTCCAGGTGGGATTGTACATCGTCTATATCCTGGACTGGCTCACCGTGTTTCAGAGGGACCAGATGTTAGTGCTTCGTCTTGAAGACCACGCCTCCAATCGTAAATACACCATGCACAAGGTCTTTGACTTCCTCAGCCTGGGACCCCTGACGGAGCAAAAGGAGGCCGAAATCACCAAAAGCCCGGCTTCCAACACCAGGAGACCGGCAGATAAAAACCTGGGCCCTATGCTACCCATCACCAGGGAGATACTCAAAGACTTTTACTCTCCCTTCAACGAAAAACTGGCCAAAGTCCTGAAGAATGACTCCTTCCTCTGGGAGAACCTCGCGAATATCATGTAACGACAAATACAAATCCATTCGTTTCTTTTTATACACTGCAGAAAATGGTACAGGGACTCTTTACattcttatttaaattattttaagttatacaGGAAGAATACTGAGTgatcaaaaacagaaacagcacaatacattttagCCGTGGACTTTTGGGATCTTGTTTCAAGTGTCGAAATCGAGAGagattcttgtttgtttttttgttgtttttttatacgagctcgtgttttttttttcttggaaggACGTTAAATATAATGTGCTACATAAAAAACACTTGATTTCTGACTATATTCTTGTCCAATGACTTCACGGTTCACCGATTAGTTTAGATGCAGAACCAACTTCCCTGAAGCTGCCCGGACTGCAATGCGTGTGAGAATCGGTTCACTGCAAAGTTACACAAACACCCCCAggtaacacacacaacagggaTTTACAAAGACTTCCACTAAATAATGGCCAAGGCTGTTTATATCCctccagtgtttgttttattttcactgcgCATTCTTTCCTATAGcgaacacaaacacatccacaTCCTTTCACATCAACGACCGTGTGCACAAGCGTGGTGTCAGACTCTGGGATTAAGATCCACACATGCATGTGTCATGTGGACTGTTCTTTTTGCAGGATCGTTATCGTTATTgcttttgctgttgttattcTCTTCGGACAATCAAACTCCTCCCACAACGTTTGCCTTAGACTGAGTGTGGAGTATTTTTTTCATCATTCAACACAGGTTGCTGGAGTTTTCGTGCCCAATAGCATCAAACCTTATTGCGTTTTAAACTGAgtttaaatgtcacaaaacGGCCATCACCTGTAACTTAAAGGGGTTGTGTTTTGCAGGGCTATACCTACGAGGAAATGCCTATGTTATGATGCACCCCtcataaataattgtaatgttatcGCAAAAGAAAAGTTTTTACACAGAAGACATTTAAAGTGCAAAAGATATGTACATTTCAAACTAACAtatatctgaaaatgttctatattgctcaaacagaaaacaaataacatacaatTAACGCATAAGGTTTCAGACAACAAGCAATCTGTAAGAACTTGTCAGCTTGAGCCACACTAATGAATAATGCCACCGATGTCACGTGATGGTGTAGATGTGAACACCTGTGGGATGCACTTTGTATCGCAATGCTGATCACTGATATACTTTAGGTAGCAATATAACCCACAGTCTGCAGATTCTACTACTGACCTACTGTAAGGAACCTATCATTGTTTCAAGagcaataacataaaaatattaaatggatACAGGTACAGAGCTCACAAACTGAGCAGCACACGGACGACTGCCCAGGCGCTTTTGTTTGAGGGGACACACAAAACCTCAGTGATTCTAGGCTGCTTCTTTCCCCCCTAGAACTCAACCtaagaaatgtattcataacCAGCTACTTATCCAAGACagcacacagacccacacacagacaataataacaCTCTCCTTGAGAAATGGTGGCCTTGGGTTTGGGTTTAGCAATACGATCAGGGTTGTAGTTGTGATTATATCGCCCTCGGTACAATTCAGGAtactgcagtacagcacagtgtaacagcacagtgcagcatATTGTACTACAACACAGTTTGTTCCAGGACAATTGATTCGGTGGAATGTCACTTTATAGGGGAACAGACAGAAGTATTTTGACGAAACTTGCAACAATTAACTATGCAATGATACTGATGCATTGTGGGGCACTTTTTTAAACTTCCACGTGACACCTTGGTTCCCCATGTCATTGTTTTGGTCGCTTATGACAATGTTTGGCTGTCCTGCACCATATTCTGTCTGTCTTTACCCTTGTGGGctcgtatttgcatattaaagggGTTATGGTGTAAAACTAAGTCTTGGGAGCTATATCCACTGACGTACAACATAAATGCTAACACTAACTTACACGGTATCAAGCACACTAACCTACATGCTCCTATACTACTTATACACGA

Function

NR:

description
PREDICTED: carbohydrate sulfotransferase 15-like

GO: NA

KEGG:

id description
K08106 CHST15; N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002800 True 3901 mRNA 0.47 9 2865443 2885096

Neighbor

gene id symbol gene type direction distance location
AMCG00002794 LOC108416076,LOC108417123,LOC108417122,LOC107746757 coding upstream 88836 2768451 ~ 2776607 (+)
AMCG00002796 NA coding upstream 98470 2766758 ~ 2766973 (+)
AMCG00002795 NA coding upstream 100792 2762592 ~ 2764651 (+)
AMCG00002792 NA coding upstream 141665 2706965 ~ 2723778 (+)
AMCG00002793 NA coding upstream 160869 2694526 ~ 2704574 (+)
AMCG00002801 cpxm2 coding downstream 24857 2909953 ~ 2956770 (+)
AMCG00002803 NA coding downstream 162380 3047476 ~ 3051879 (+)
AMCG00002804 NA coding downstream 285247 3170343 ~ 3172461 (+)
AMCG00002810 NA coding downstream 310044 3195140 ~ 3198501 (+)
AMCG00002814 NA coding downstream 371950 3257046 ~ 3267033 (+)
G138719 NA non-coding upstream 173603 2691429 ~ 2691840 (+)
G138712 NA non-coding upstream 197905 2665458 ~ 2667538 (+)
G138634 NA non-coding upstream 401807 2461638 ~ 2463636 (+)
G138593 NA non-coding upstream 804839 2060377 ~ 2060604 (+)
G138562 NA non-coding upstream 926318 1938147 ~ 1939125 (+)
G138816 NA non-coding downstream 287811 3172907 ~ 3177610 (+)
G138871 NA non-coding downstream 491150 3376246 ~ 3378027 (+)
G138903 NA non-coding downstream 842401 3727497 ~ 3727731 (+)
G138905 NA non-coding downstream 1040073 3925169 ~ 3928654 (+)
G138927 NA non-coding downstream 1104828 3989924 ~ 3990348 (+)
AMCG00002784 NA other upstream 370849 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 1455355 1406611 ~ 1410088 (+)
G138506 NA other upstream 1463014 1401289 ~ 1402429 (+)
G138476 NA other upstream 1767968 1095939 ~ 1097475 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other upstream 1772364 1089278 ~ 1093079 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other downstream 222362 3107458 ~ 3116081 (+)
G138888 grid1,LOC106607602 other downstream 543593 3428689 ~ 3596108 (+)
G138941 NA other downstream 1144428 4029524 ~ 4029924 (+)
G139176 NA other downstream 2211635 5096731 ~ 5098744 (+)
G139492 NA other downstream 3262652 6147748 ~ 6153120 (+)

Expression


Co-expression Network