AMCG00002805 (ikzf5,LOC107744272,LOC104955501,LOC107583523)


Basic Information

Item Value
gene id AMCG00002805
gene name ikzf5,LOC107744272,LOC104955501,LOC107583523
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3169166 ~ 3180564 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002805
CGGGGGTGAGAGGCTGTCATGTGACTCGGGAGCTGTGGGTCCCACGCGTGTCTGGGCATGAGTGGGTGTGCTGAGCCGGGCGGCGCGGCGTGCTCCCCGGCGTGCCTGTGCGTGCTGTGCGGGCTCCCCGGAGCAGGGAAGTCCAGTCTGGCCCGGGATCTGCCCGCAGTGCTGGGGCGCAGAGGCTGGGGGTGTCTGGTCCTGGGGTACGACGACCTGATCCCAGAAGAGGCGTTTGAGCGGAGAGGGGAGGACGCGGGCGTCCCGGCAGACACGCAGAGCAGCTGGCGGAGCTACAGGCAAGGGGTGCTCCGGTGCCTTGACCGCTTCCTGCAGAGCCCCAGCTGTGCTGCGGCCGAGTGCGGCGCGCCGGGGGGGCCGGAGACGTGGGACCGCTTCGTGCGATGCCTGCGAGAGTCACCCGGCGCACCCCTTATCATCATCCTGGACGACAATTTCTACTACCCCAGCATGAGATACGAGGTGTACCAGCTCGCCAGGAAGTATTCCCTGGGGTTCTGTGTGCTGTACCTACAGTGTGCCATGAGCACGTGCCTGAGTAGGAACCGGCGGAGGAGCCGCCCGCTGCCGGACCGGGTCATCGAGGACATGGCACTGCGCATCGAGCCCCCCGACCCTCGCAAGAACCCCTGGGAGCAGAGCAGCCTGGCGCTGTGCAGCACCGACGGCCTCTCGCAGCAGGATGGGCAGAAGGTGATGGAGCTGATTGCTGCTGCTTTAGACAAACCGCTGAGTCCAGTCCAGGATCTCTCCGAGGAGAAGGACACGGCCCGACGGATCTGCGCCTCCAGTGTCCTTCACCAGGTGGACCAGGCCTGTCGCCGCCTCGTCTCCCAGGCCATGCAGGATGCCCGAGATCGTGACGCGTCTCCAAGTGGCATGAGAGCCCTGGCAGCGGAGCTCGGTCAGCTGAAGGGAAGGCTGCTGGAGGACCTGCGGAGACGGGCGCTGCAGGACGGTCCCGCCGGCCTCGGGGATGGGGTAGAGGCGGCGGTGAGCCGAGCGGTCGCGCTCTTCGATCGGGACAAAACGGACCTAATGAGGAGGTTCTGCACAGTGACCCCCCCGTGACAACCGAAGAGTCAGAGAGAACATGCTGGAGGAAACTTTACTTTAATTATAAGGACCCCTGGCCCCCCGGCGTTACCTGTGTGTATGCGGATGTGCTCGATGAGGCGCGCCGTGCCCTTGCTGGCGTAGTTGCAGTAGCGGCACTTCAGCTTTCCGTCATACGTCCGCTCGAAGCCGTCCACCAGCATTCCCGAGCTGTCCTCCAGAGACACCTCCACCGAGGGGTGGTCCAGCCCGTTCTGGTCATTGTCCGGCCCAGCTCCTTGCAGCACCTCGGTCTCCTTCTCGCCGCCCACTGACCCAGAGATCATGTTGACATGCTGGGTCTGCTGGGTCAGGTACTCCTGGAAGTCCTTGACAAAGTCCAGCGGCTCTGGTTTCTTCTCTCCCATGTTCCCTGCTGGCTGGGCTCCGGGGATTCACCTGCACTTACCTGTTCCTCGGGTAGtgtttacagctctggaaagcCCCCTGTGTTTCACCAGCATCAAGTCACGGCAGGAGGGCATCCGCTGGCGATGCAAACACTGTCTCCATGAACTGTCCCCCGCCGGAGGAAACCGAGGGCCCGAGGGGGCGACGATACGAGCCCGCTTTTATCAAGCCGGTGTCGGGCGGCGGATTCCCATGGAGACGAGTCGGCGATGTAAACGGCAGCcccaaaacaaaaggaaagcgCCTAGGTCCGCGGGGGTC

Function

symbol description
ikzf5 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within determination of intestine left/right asymmetry; determination of left/right asymmetry in lateral mesoderm; and determination of pancreatic left/right asymmetry. Predicted to be located in nucleus. Is expressed in several structures, including brain; digestive system; eye; pharyngeal arch cartilage; and thymus. Human ortholog(s) of this gene implicated in thrombocytopenia. Orthologous to human IKZF5 (IKAROS family zinc finger 5).

NR:

description
PREDICTED: zinc finger protein Pegasus isoform X1

GO: NA

KEGG:

id description
K10837 PSTK; O-phosphoseryl-tRNA(Sec) kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002805 True 1788 mRNA 0.64 9 3169166 3180564

Neighbor

gene id symbol gene type direction distance location
AMCG00002806 acadsb,LOC107746745,LOC102776774 coding downstream 662 3162801 ~ 3168504 (-)
AMCG00002808 NA coding downstream 28517 3138948 ~ 3140649 (-)
AMCG00002809 NA coding downstream 35280 3124924 ~ 3133886 (-)
AMCG00002807 bub3,LOC106575478 coding downstream 48069 3115861 ~ 3121097 (-)
AMCG00002802 gpr26,LOC107387797,LOC100699461 coding downstream 195370 2965994 ~ 2973796 (-)
AMCG00002811 NA coding upstream 538 3181102 ~ 3191496 (-)
AMCG00002812 NA coding upstream 18104 3198668 ~ 3206556 (-)
AMCG00002813 NA coding upstream 33061 3213625 ~ 3219238 (-)
AMCG00002818 LOC107660481,LOC107745581,LOC106578991,LOC107598034 coding upstream 89925 3270489 ~ 3293427 (-)
AMCG00002820 plekha1 coding upstream 124001 3304565 ~ 3328956 (-)
G138799 NA non-coding downstream 56084 3060561 ~ 3113082 (-)
G138742 NA non-coding downstream 448462 2720412 ~ 2720704 (-)
G138738 NA non-coding downstream 454478 2714377 ~ 2714688 (-)
G138737 NA non-coding downstream 461091 2707869 ~ 2708075 (-)
G138720 NA non-coding downstream 477297 2691430 ~ 2691869 (-)
G138873 NA non-coding upstream 195684 3376248 ~ 3378038 (-)
G138906 NA non-coding upstream 744603 3925167 ~ 3928618 (-)
G138948 NA non-coding upstream 895051 4075615 ~ 4076838 (-)
G139024 NA non-coding upstream 1275228 4455792 ~ 4456002 (-)
G139025 NA non-coding upstream 1285390 4465954 ~ 4466189 (-)
G138741 NA other downstream 449747 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 2243768 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 2347575 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 2979829 184121 ~ 189337 (-)
G138245 NA other downstream 3022326 144926 ~ 146840 (-)
AMCG00002828 NA other upstream 748197 3928761 ~ 3953324 (-)
G138932 NA other upstream 821086 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 3881909 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 4168247 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 4750602 7931166 ~ 7938241 (-)

Expression


Co-expression Network