AMCG00002810


Basic Information

Item Value
gene id AMCG00002810
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3195140 ~ 3198501 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002810
tacatctatatataaaaatataaggctctatatatttatagtagTTTCGTTTATTTGTCGTTTGTCAATATATGCTATGCAAAAATGCTACTTCTGTTGTCATGCGGGCTTTAGGACAGTCCTCCGTCGCTTTGGGTCCTTCTACAGGTCCGTCGCTGGAATGACGTGTCAGCAAATCTGGGAGAGCTGTCAGTTGGTTTGCATGGGGACGCGCACGTTTAAATTACacaacttaaatatatatatgtattactcTTCTTATACGtgtatgttttaagaaaatgaacTCATTTTCGCATAGGGTTGTTAATATAGCCTCCGAGAACCACTGCCCGAGGTCTTATGTGATATGTGCATGGAGACATCGCGTTTGAAATGAGTGTTTATCATCAATATCAGTAGTATCCGACTCTATCGAGGCTCTGCGGCTCTGGGGCTCTGACGTGGGCTCGGGTTATGGTCACAGACGCCTGGCTGTCACAATGGAGCGGCGGTGTTTGATCTCCAGTGCGGACGGCCGGGTCTCTGGTCATGTGACCTGGGCCAGCACTTCTCCGGACCGGCAGCTGGGGGACGTGCTGGTGCTCCGCAAACACGCAGCCGGCAGCTCCGAGGACCCGGGCGAGGCTCTACCTGCACCCGTGTTCCTGGAGCAGACCCCGGGAGATGGCGCCGGCCCCTGCACCCTGACCCTGCAGTGTGGCCCCCACTCTGGCGCCGCCATCTCCTCCCTGCTGGTGGTGAGCGAGGCCCGGACCATGGAGGTGTACTGCGACACCGAGTACTGCGGTACCTGCCGAGGGGAGCGTGTGGGCGGCCTGCGGGCCAACGGTGTCTCTGAAAACATTGCCCTGTATAAGAAAGAGCTGACGTTAGACTGTCCTGCTACATCGTGTGAAGTAAAGCTGCTGTCTCTTGGCGGGAGGAGCAGAGTGGGCATCGGTCAGATGGTGTTGGGACTGAAGCCCGCGGGTCCAGCGGCGGTTTCGCCCAGCGCGGGGGGCAGCGTGGACCTGCAGGCGaacAAGCAGGATGTCCTCGGGGGGTTTCTGCCGATGCTCCTGGGTGGTGGGGGGTCGCTGGCGGCTCTGGTGAGAGGAGGCATCGCGGCGCACACCGCAGGAGGAGTCGGGCTCCCCGCTGGGGGAGATGGGCCTCAGGGCACAGCCATCCCCAGCCCCGCAGTCCCATCGCAGTCAGCCAAATCCTGCCCCTCCGGTCAGCCCTCTGGACACGGCCTGACGGACACGGACAGGACGTCCTTCCGGGGGCAGGGCAGCCTGGGCCCCGAGACGCTGCCCCTCCTGCGAGGCATGTGTGGTGCGGTGACACGGCTGCGCGGCGAGACCGGGGCCCCTGTGGAGAGACCGCTGTCGGAGCCACCgcaggagaggccATGCTGCCGGGCCCTGGAGGAGGCGGTGGAGCGCCGTCTGGAGGCGATGGAGAGGAGGCTGATGGAGCACATCGACCTGCGCCTCTCCGCCCTGCAGCGAGGCCTGGAGAGCACGGTGATGGCGGTCCTGGCCCCGGGGACGCCCCCTCTCGCCCCACACAACGGCCCTCTGCACTGCCGCTGCCGGGAGGAGCTGCCCAACGGAGACGCCTGAGCGCAGACACCACAGGGTGCCCCGGCACTGCATCACAGCTGTAAACGCTCGGGCACAACGGTTCTATAGAGGGAACGCTGAGAAATGTGTAGGTTTGGAAGTACTTTTGCGTTACTTTAAAGGCACTGAAGGCAGATGTCCAAAAGACTGTGACTGTGACTCACCACGCCTTGTTATTTTCCCCTCGGTTGTCGTTTTTGTTTTCGGACTATTCTGTTCTTGGGAGGTTATAGAAAATACTGCATTTGATCCGTGCAAAAGGGACTGGCTGATAATACAAACCGCACAGAGGGCTGCAGTAATCTCTCAAATACTGTTCTTCATGCTTtcaaagtatatttatatatatttgttttcattgacttattttgttttattttcttgcctaCGATGTATGTTTCTACCCCAGAGGGCGCTGTGTCGGGTGTCAGGTGGTTTAAGTGTCTGTCTTGAGTTGCTTCTCACTGTGACACCCTGACTGGTGACCTGTAATCCCTACAGTGTGTAACATTGTTGCTCACTGCTGTCTGCAAGCGGCAGATTCGGTTGAAAAGGGAGTTCTCAT

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002810 True 2175 mRNA 0.57 6 3195140 3198501

Neighbor

gene id symbol gene type direction distance location
AMCG00002804 NA coding upstream 22679 3170343 ~ 3172461 (+)
AMCG00002803 NA coding upstream 143261 3047476 ~ 3051879 (+)
AMCG00002801 cpxm2 coding upstream 238370 2909953 ~ 2956770 (+)
AMCG00002800 LOC106512385,LOC106562767 coding upstream 310044 2865443 ~ 2885096 (+)
AMCG00002794 LOC108416076,LOC108417123,LOC108417122,LOC107746757 coding upstream 418533 2768451 ~ 2776607 (+)
AMCG00002814 NA coding downstream 58545 3257046 ~ 3267033 (+)
AMCG00002816 LOC106607591 coding downstream 149681 3348182 ~ 3348766 (+)
AMCG00002815 LOC107659261 coding downstream 160292 3358793 ~ 3376168 (+)
AMCG00002821 NA coding downstream 236642 3435143 ~ 3435592 (+)
AMCG00002822 grid1b,grid1,LOC102791605,LOC107598047,LOC107563625 coding downstream 362851 3561352 ~ 3562149 (+)
G138816 NA non-coding upstream 17530 3172907 ~ 3177610 (+)
G138719 NA non-coding upstream 503300 2691429 ~ 2691840 (+)
G138712 NA non-coding upstream 527602 2665458 ~ 2667538 (+)
G138634 NA non-coding upstream 731504 2461638 ~ 2463636 (+)
G138593 NA non-coding upstream 1134536 2060377 ~ 2060604 (+)
G138871 NA non-coding downstream 177745 3376246 ~ 3378027 (+)
G138903 NA non-coding downstream 528996 3727497 ~ 3727731 (+)
G138905 NA non-coding downstream 726668 3925169 ~ 3928654 (+)
G138927 NA non-coding downstream 791423 3989924 ~ 3990348 (+)
G138940 NA non-coding downstream 825941 4024442 ~ 4024745 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 79059 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 700546 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 1785052 1406611 ~ 1410088 (+)
G138506 NA other upstream 1792711 1401289 ~ 1402429 (+)
G138476 NA other upstream 2097665 1095939 ~ 1097475 (+)
G138888 grid1,LOC106607602 other downstream 230188 3428689 ~ 3596108 (+)
G138941 NA other downstream 831023 4029524 ~ 4029924 (+)
G139176 NA other downstream 1898230 5096731 ~ 5098744 (+)
G139492 NA other downstream 2949247 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 3868354 7066855 ~ 7073538 (+)

Expression


Co-expression Network