AMCG00002823 (LOC105909129)


Basic Information

Item Value
gene id AMCG00002823
gene name LOC105909129
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3677642 ~ 3681292 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002823
ATGCAGAAACTTTGCTACGCTGTGGCACAGGGGTCCGAGTCTCGCCCGGGCCGGTACCCCCAAGATCTCCACATGAAGCTGGCCACCTGGGACTCCAGCCAGGGCCTGAACGGCAGCCTGAAGGAGAGCCGCATCGAGAACGGCATGCAGGGCGTCACAGTCAAAGTGGTGACACTGCTGGAGGAGCCCTTCATCATGGTCGCCGAGAACATCCTGGGACAACCCAAACGCTACAAGGGCTTCTCCATCGATGTGCTGGATGCGCTGGCCAAGAGCCTGGGCTTCAAGTACGAGATATATCAGGTGTCCGACGGCAAAGGCTGTCCCCCTCtcactgtgtgtttgtctccaCAGAGGGCTGACCTGGCCATCTCCGCCATCACCATCACGCCGGAGCGGGAGAACGTGGTGGACTTCAGCAAGCGCTACATGGATTACTCGGTGGGCATCCTGCTGCGCAAGCCTGAGGAGAAGATCAACATCTTCTCGCTGTTCGCACCCTTCGACCTGGCCGTGTGGGCGTGCATCGCCGCCGCCATCCCCGTGGTCGGCGTCCTCATCTTCGTGCTGAACCGGATGCAGGCGGTGCGGACGCAAAACCCCCCCGGACACCAGCCGCCACCCCCCACGCCCTCGATGTCCACCTCCCTGCACAGCGCCATCTGGGTCGTGTACGGGGCTTTCGTACAGCAAGGTGGGTCGCTGCCCTATACAGTAACCCCATGGTCCAAACACACGACAGTGGGGCGACAAACAGCAGGGAATCTGCCCAGTCAAATCTGA

Function

NR:

description
PREDICTED: glutamate receptor ionotropic, delta-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002823 True 783 mRNA 0.61 4 3677642 3681292

Neighbor

gene id symbol gene type direction distance location
AMCG00002822 grid1b,grid1,LOC102791605,LOC107598047,LOC107563625 coding upstream 115493 3561352 ~ 3562149 (+)
AMCG00002821 NA coding upstream 242050 3435143 ~ 3435592 (+)
AMCG00002815 LOC107659261 coding upstream 301474 3358793 ~ 3376168 (+)
AMCG00002816 LOC106607591 coding upstream 328876 3348182 ~ 3348766 (+)
AMCG00002814 NA coding upstream 410609 3257046 ~ 3267033 (+)
AMCG00002825 grid1b,grid1 coding downstream 18277 3699569 ~ 3707678 (+)
AMCG00002826 NA coding downstream 29720 3711012 ~ 3711317 (+)
AMCG00002827 NA coding downstream 289820 3971112 ~ 3974319 (+)
AMCG00002834 NA coding downstream 318998 4000290 ~ 4006473 (+)
AMCG00002833 NA coding downstream 335388 4016680 ~ 4022394 (+)
G138871 NA non-coding upstream 299615 3376246 ~ 3378027 (+)
G138816 NA non-coding upstream 500032 3172907 ~ 3177610 (+)
G138719 NA non-coding upstream 985802 2691429 ~ 2691840 (+)
G138712 NA non-coding upstream 1010104 2665458 ~ 2667538 (+)
G138634 NA non-coding upstream 1214006 2461638 ~ 2463636 (+)
G138903 NA non-coding downstream 46205 3727497 ~ 3727731 (+)
G138905 NA non-coding downstream 243877 3925169 ~ 3928654 (+)
G138927 NA non-coding downstream 308632 3989924 ~ 3990348 (+)
G138940 NA non-coding downstream 343150 4024442 ~ 4024745 (+)
G138946 NA non-coding downstream 390989 4072281 ~ 4076788 (+)
G138888 grid1,LOC106607602 other upstream 81534 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 561561 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 1183048 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 2267554 1406611 ~ 1410088 (+)
G138506 NA other upstream 2275213 1401289 ~ 1402429 (+)
G138941 NA other downstream 348232 4029524 ~ 4029924 (+)
G139176 NA other downstream 1415439 5096731 ~ 5098744 (+)
G139492 NA other downstream 2466456 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 3385563 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 3695395 7376687 ~ 7379487 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004567 grid1b coding NC_007123.7 CM002896.2 12112384 ~ 12833736 (+)