AMCG00002824 (grid1,LOC107375932,LOC106530676)


Basic Information

Item Value
gene id AMCG00002824
gene name grid1,LOC107375932,LOC106530676
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3665449 ~ 3667197 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002824
ATGTTGGCCAACGCCTTCTACAGGAAGCTGGAGGACAGGAAGTGGCACAGCATGGCCAGCCTGAATTGCATGAGGAAGTCCACCAAGCCCTGGAACGGAGGCTGGTCCATGTTGGAGACCATCCAGAAGGGCAGGATCACCGGACTCACGGGCACCATGGACTTCCGGGATGACAGCTCCAACCCCCACGTGCAGTTCGAGATCCTGGGGACGAGCTACAGCGAGACGTTCGGGAAAGATGTCAAGCGGCTGTGCAAACAGTCAGAGCCCTGTAAGCACAGCGGCACGTGCCCAGCCGGAGCTCTGGGGGGCCGCATGTATCTCCTGAGAGGCTGCAGGCAGCAAACCCAGGGCCTCCCAGAGGAGCTCGCCTCAGCAGAGGGCCTTCAAAGACAACACAGCCTGGACTCCCTGTGTGGATGTCTCCCTGCAGGCCGTTGTGATTAA

Function

symbol description
grid1 Predicted to enable glutamate receptor activity; identical protein binding activity; and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission; modulation of chemical synaptic transmission; and social behavior. Located in extracellular exosome.

NR:

description
PREDICTED: glutamate receptor ionotropic, delta-1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002824 True 447 mRNA 0.60 3 3665449 3667197

Neighbor

gene id symbol gene type direction distance location
AMCG00002819 NA coding downstream 286151 3378606 ~ 3379298 (-)
AMCG00002817 NA coding downstream 320115 3331717 ~ 3345334 (-)
AMCG00002820 plekha1 coding downstream 336493 3304565 ~ 3328956 (-)
AMCG00002818 LOC107660481,LOC107745581,LOC106578991,LOC107598034 coding downstream 372022 3270489 ~ 3293427 (-)
AMCG00002813 NA coding downstream 446211 3213625 ~ 3219238 (-)
AMCG00002829 NA coding upstream 310459 3977656 ~ 3979035 (-)
AMCG00002830 NA coding upstream 313622 3980819 ~ 3980998 (-)
AMCG00002837 NA coding upstream 341458 4008655 ~ 4016581 (-)
AMCG00002836 NA coding upstream 355384 4022581 ~ 4029995 (-)
AMCG00002838 NA coding upstream 367173 4034370 ~ 4035880 (-)
G138873 NA non-coding downstream 287411 3376248 ~ 3378038 (-)
G138799 NA non-coding downstream 552367 3060561 ~ 3113082 (-)
G138742 NA non-coding downstream 944745 2720412 ~ 2720704 (-)
G138738 NA non-coding downstream 950761 2714377 ~ 2714688 (-)
G138737 NA non-coding downstream 957374 2707869 ~ 2708075 (-)
G138906 NA non-coding upstream 257970 3925167 ~ 3928618 (-)
G138948 NA non-coding upstream 408418 4075615 ~ 4076838 (-)
G139024 NA non-coding upstream 788595 4455792 ~ 4456002 (-)
G139025 NA non-coding upstream 798757 4465954 ~ 4466189 (-)
G139026 NA non-coding upstream 809267 4476464 ~ 4476663 (-)
G138741 NA other downstream 946030 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 2740051 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 2843858 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 3476112 184121 ~ 189337 (-)
G138245 NA other downstream 3518609 144926 ~ 146840 (-)
AMCG00002828 NA other upstream 261564 3928761 ~ 3953324 (-)
G138932 NA other upstream 334453 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 3395276 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 3681614 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 4263969 7931166 ~ 7938241 (-)

Expression


Co-expression Network