AMCG00002825 (grid1b,grid1)


Basic Information

Item Value
gene id AMCG00002825
gene name grid1b,grid1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3699569 ~ 3707678 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002825
ACCTTCCAGGACCTGGCCAGGCAGATGGAGGTGACGTACGGCACGGTGAAGGACTCGGCAGTGTACGACTACTTCAGAGCCAAGGGCACCAACCCCCTGGAGCAGGACAGCACCTTCGCCGAGCTCTGGAGGACCATCAGCAAGAACAACGGCCAGGACAACTCGGTCACCACGGCCAGCGAAGGCATCCGAAAGGCGAAGCAGGGCGGCTATGCGTTCCTGTGGGACATGGCGGTGGTGGAGTATGGTGCGCTGACGGACGACGACTGCTCCGTGACCGTGACGGGGAACAGCGTGAGCAGCAAGGGCTACGGCATCGCCCTGCAGCATGGCAGCCCCTACCGGGACCTCTTCTCTCACAAGATCCTGGAGCTGCAGGAGAAGGGCGACCTGGACATCCTGAAGCAGAAGTGGTGGCCGAGGACGGGCCGCTGCGACCTGGACAGCCACGGCAGTGCCCAGCCCGACGGCCGCGCGCTCCGGCTGCACAGCTTCGCCGGCGTCTTCTGCATCCTGGCGGCAGGGCTGCTGCTGGCCTGCCTGGTGGCCGGGCTAGAGATGTGGTGGAACGGCAACCGGTGCCGGCAAGAGCAGCCCAAAGAGGTGACAGAGCACAGAGCCAAGAGGACAGAGCGGGGGGAGGACACTGCCACACTCTACTTTAAGGATCCAGCCGCAGACACGTGCCTTGACTTAGTCGAACTCCAGTACACACAGCTATAG

Function

symbol description
grid1b Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Orthologous to human GRID1 (glutamate ionotropic receptor delta type subunit 1).
grid1 Predicted to enable glutamate receptor activity; identical protein binding activity; and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission; modulation of chemical synaptic transmission; and social behavior. Located in extracellular exosome.

NR:

description
glutamate receptor ionotropic, delta-1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002825 True 723 mRNA 0.64 3 3699569 3707678

Neighbor

gene id symbol gene type direction distance location
AMCG00002823 LOC105909129 coding upstream 18277 3677642 ~ 3681292 (+)
AMCG00002822 grid1b,grid1,LOC102791605,LOC107598047,LOC107563625 coding upstream 137420 3561352 ~ 3562149 (+)
AMCG00002821 NA coding upstream 263977 3435143 ~ 3435592 (+)
AMCG00002815 LOC107659261 coding upstream 323401 3358793 ~ 3376168 (+)
AMCG00002816 LOC106607591 coding upstream 350803 3348182 ~ 3348766 (+)
AMCG00002826 NA coding downstream 3334 3711012 ~ 3711317 (+)
AMCG00002827 NA coding downstream 263434 3971112 ~ 3974319 (+)
AMCG00002834 NA coding downstream 292612 4000290 ~ 4006473 (+)
AMCG00002833 NA coding downstream 309002 4016680 ~ 4022394 (+)
AMCG00002835 LOC108269590,LOC107750875,LOC107583634,LOC107668614 coding downstream 323690 4031368 ~ 4033632 (+)
G138871 NA non-coding upstream 321542 3376246 ~ 3378027 (+)
G138816 NA non-coding upstream 521959 3172907 ~ 3177610 (+)
G138719 NA non-coding upstream 1007729 2691429 ~ 2691840 (+)
G138712 NA non-coding upstream 1032031 2665458 ~ 2667538 (+)
G138634 NA non-coding upstream 1235933 2461638 ~ 2463636 (+)
G138903 NA non-coding downstream 19819 3727497 ~ 3727731 (+)
G138905 NA non-coding downstream 217491 3925169 ~ 3928654 (+)
G138927 NA non-coding downstream 282246 3989924 ~ 3990348 (+)
G138940 NA non-coding downstream 316764 4024442 ~ 4024745 (+)
G138946 NA non-coding downstream 364603 4072281 ~ 4076788 (+)
G138888 grid1,LOC106607602 other upstream 103461 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 583488 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 1204975 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 2289481 1406611 ~ 1410088 (+)
G138506 NA other upstream 2297140 1401289 ~ 1402429 (+)
G138941 NA other downstream 321846 4029524 ~ 4029924 (+)
G139176 NA other downstream 1389053 5096731 ~ 5098744 (+)
G139492 NA other downstream 2440070 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 3359177 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 3669009 7376687 ~ 7379487 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_04271632_04393877 GRID1A, GRID1 coding CI01000189 null 4271632 ~ 4393877 (-)