AMCG00002827


Basic Information

Item Value
gene id AMCG00002827
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3971112 ~ 3974319 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002827
GGCTGTCTGGGAGTTGCAGCCTATGGGTCCCACGATGCCCCTGGTTCTTACCTTGCTGCTGCTGGCACTACGCCTGGACCCTGGCACTCTTACACTGACTCTGAGCTCCCCTCTCtttcccctccttctctccttccctctatCTGGCTTGGTCCAGAGGAGCTGTGCCGGATGCTGCGGTGCCACTCTCCAACTGGCTCGTGGTGTCAGGTGGTGCGGGAGAGTGGGGTCCTGGTTCCCAAGTGCGTGTGTCCGCAGCGCTGCCCACGGCAGGGGGCACCGGTGTGCAGTGTGCTGGGAAAGTCCTATGGGAGTCCATGTCTGCTGCACAAGGAGGCGTGTCGCAAGAGACGGCGCATCGGACTGGCCCACCCCGGGCGCTGCAAGGtcccTCAGACACTGTGCTCGGAGGAAGAGTATGGCCAGTTCCCCTATCGCCTGCTGGACTGGTTCCTGCTCATCAGCCGTCTGAGAGAGTCCGACAGCAGCGCGGCGTCACAGAGCTGCCTGAGCCACACGCAGCGCAGAGACCTGGCTGAGGGGCAGTTCGGGCGACTGGATCGGAACCGGGACGGGAAGCTGAGCCGCCGGGACCTGAGGAAGCTGCACTACAAGCAGATGCCCCTTGAGCAGTGCGCCCTGCGCTTCTTCCAgtCATGTGACAGTGACAGGAACAGGAAGGTGACTCTGCAGGAGTGGACAGGCTGTCTGGTGGACCGCTCTGAGGACTGGTACCAGGACttcatgtctatGAAGATGGGCTCCAGTAAGGTGTGTCCAGCAGGGGACAGTAACCACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002827 True 801 mRNA 0.62 7 3971112 3974319

Neighbor

gene id symbol gene type direction distance location
AMCG00002826 NA coding upstream 259795 3711012 ~ 3711317 (+)
AMCG00002825 grid1b,grid1 coding upstream 263434 3699569 ~ 3707678 (+)
AMCG00002823 LOC105909129 coding upstream 289820 3677642 ~ 3681292 (+)
AMCG00002822 grid1b,grid1,LOC102791605,LOC107598047,LOC107563625 coding upstream 408963 3561352 ~ 3562149 (+)
AMCG00002821 NA coding upstream 535520 3435143 ~ 3435592 (+)
AMCG00002834 NA coding downstream 25971 4000290 ~ 4006473 (+)
AMCG00002833 NA coding downstream 42361 4016680 ~ 4022394 (+)
AMCG00002835 LOC108269590,LOC107750875,LOC107583634,LOC107668614 coding downstream 57049 4031368 ~ 4033632 (+)
AMCG00002839 NA coding downstream 63391 4037710 ~ 4041401 (+)
AMCG00002831 NA coding downstream 69274 4043593 ~ 4052584 (+)
G138905 NA non-coding upstream 42458 3925169 ~ 3928654 (+)
G138903 NA non-coding upstream 243381 3727497 ~ 3727731 (+)
G138871 NA non-coding upstream 593085 3376246 ~ 3378027 (+)
G138816 NA non-coding upstream 793502 3172907 ~ 3177610 (+)
G138719 NA non-coding upstream 1279272 2691429 ~ 2691840 (+)
G138927 NA non-coding downstream 15605 3989924 ~ 3990348 (+)
G138940 NA non-coding downstream 50123 4024442 ~ 4024745 (+)
G138946 NA non-coding downstream 97962 4072281 ~ 4076788 (+)
G139038 NA non-coding downstream 609546 4583865 ~ 4584167 (+)
G139044 NA non-coding downstream 652338 4626657 ~ 4712825 (+)
G138888 grid1,LOC106607602 other upstream 375004 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 855031 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 1476518 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 2561024 1406611 ~ 1410088 (+)
G138506 NA other upstream 2568683 1401289 ~ 1402429 (+)
G138941 NA other downstream 55205 4029524 ~ 4029924 (+)
G139176 NA other downstream 1122412 5096731 ~ 5098744 (+)
G139492 NA other downstream 2173429 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 3092536 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 3402368 7376687 ~ 7379487 (+)

Expression


Co-expression Network