AMCG00002836


Basic Information

Item Value
gene id AMCG00002836
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4022581 ~ 4029995 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002836
GCGATTGTGTTTGTAAGAAGGTCATTTAGTGGGTGTAAAGTCCAGGCTGTCCACGCCGGCACTTCCCTGATGACAGAGTCACACACAGACGCAGCACAGCCTGCCCCGCTCTGCCGACGCCACAGCATTGCCCGGGGGAAGCACCAACAACAGATACGATCCACAACGACAGCGGTAACTGCGACTCCAGACATAAACCCTCCTGCACGgcccctgccctctctctcagctcccCCACAGCCGGCAGAAGCAGCGGCCCGTCAGCCGGAGACGGAGGAGTCCTTTGCCTCAGAGGTGGGACTGAGATATCTGTGCAACATCGAAACAAGACAAGCCGCACTGCCCTCTGGTGGCCAGGGACCCGGTGTGGCACTGCAGCACTGCTTCCCGCATTGCCTGGCTGTGGTTCTGGAGGACACTGTGCTGGGTCGCTCCCAGCTCAAAGCCCTGGCCCCCACGCCTCGATATGGCGCCGCCCTGCTGGCTGTGGTGCTCTACTCCGTAGGCAAAACGCTCTACAGCTTCCTCACACGGCTCTTTGTCACTCAGTATCACTACAGAGGTCTGGTACAGCTCGCCTTCGCTCAGGCTCCTCCCCAGATGCTGCTGACCCTGCTGGCCGCTGTGGCGCTGCAGACTCTGGGCGCCGTGTCCCTGCAGCCCTTCTCCCTGCGGCGCGGCGAGCAGCTGCTGGTGCCGGCGGTCGGCTCTGGTGTCCAGGCGGTGCTGGGGCTGTGGGCGGAGGTCAACGCCCCCGGTGGCCTGTTCTCCCTcacacagctgctgctgccccTGGCCTGTGTGGGCTGTAGCCACGCCCTGGCGCTGACACGGACGCCCTCCCAGCACTGCACTGCCCTGCTGGCCGGCTGGACGCTCGTCCCATTGCTGATCACAGtCCTGCAGGTGTCCCTCTGGGCCGAGCCGCTAGTGGTCCTGTACTCAGCTCTGAGTGTGCTGCTGCACAGCCTGTCCCTGGGCTGGCTGGCCAAGGTGGgggagcagcagcagtgtgAGCCAGATGGCCGGGCCTCTGCGCTGGACCTGCACTTCACCCTTTGCGTCGACAGCAGCCTGGCGCTGGGCCTCCTCTGCCTGCTGCTGCCCGGCGGCCTCAGTGAACTGGGCCAGGGCAGCTGGCACAGCCTGCTCTTCCTGGGGTACCTGCTGGGCGTGCTGGCACTGGGGGCCCTGCAGAGCCTCCTGCTGTCCCTGGTGGCCCTGTGCTGCTCCCCGGTGGCAGCCGGTGTCCTGCACACTGCGCTGGACCTCACCCTGCCTCTGCGCAGCCTGCTGTAGCTCCACTGTGGATGGGGACCAGCCCGGCAAACTCCTGGAGAGACGCTTTCGTTTGTTTTGATCATGGTCAAATGATCACCTGCATTGAcatcttttgcattttgtgtctGGCAGCACTGATGCCTCGACCGACCTGAACCCCAGCAGGGTCAGGTCAAGACTACAGCTGATTGGTTGAGCACTgttgctcacacacacatgcatgaaaTGCAGTTCAAGTTTCGTTACAGGGCTGTGATTGGAGAAATTGATGAAGAAACGGATTCTGCCCTGGATCTGGGCAACATTCGTGCAGAATCACACAATTCTGTGAGGTATAACACAGGCCTGGTTCTTGGGCATTAACCACATTAACCACAAAATCCAAAATGGCTTCCATACTTCGTATGACTCCGGAGAGCTTCGTCCTTTTCCGAAGCTGTAAATCAATTCTCATTGGTTCAGAGGCAAACGTAAACATTGACTCTGACAGGGCTCTCCATTGGTTGTGAAGCCTGGTTTTTGAGATGTCTTCATTTGGTTGGAGTGCCGTTTTAAGGGATAGTGATTTCTTCTTCTTACTATGtattttcaacacatttaaactaATGTTGACgaactgcaataaataaaaaataaaaaacctgccAGAATGTCTATGTGTACCACAAACCCTAAATATTATCGCTGTTTGTCTATTGCTGGTTTTGGGATTTGTtatgcacacattttgaaacCCATCTTGCTTTGaaacacaatgtaataaaacaaacattacaaaactgtacaagAGGGGAACTTTCTTAAGTGCAATATGAATTATGTGCAGAATTCCTCCGCTTACCGTCTCTCAGCAGTCAGCAAGTTGTGACAAGTCATGCGAGTTATGAAAAGGCTtatgtatagtttaattatGTCATAGTTGCAGTTTACTTTGTGTTCAATGCATAGATGCAGCGAGAACTGGACTATgttacttagttattaatggacaccaaacgatggtgcgaatggcctcctctcaattagACACttgatgtaattgtaattgaaaacaattgGTTGGAACAATAACctgcagggtaggggctcctccagtttttaggtttttaatgttttccccTGTGCGACAGTCTCACTAAAgcaatttcaataataaaataacttgaggacaatgttataatatttacataagcattgtgtgtgttgggcAGTAAAGAACATGTCTTTttgaacaa

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002836 True 2516 mRNA 0.53 5 4022581 4029995

Neighbor

gene id symbol gene type direction distance location
AMCG00002837 NA coding downstream 6000 4008655 ~ 4016581 (-)
AMCG00002830 NA coding downstream 41583 3980819 ~ 3980998 (-)
AMCG00002829 NA coding downstream 43546 3977656 ~ 3979035 (-)
AMCG00002824 grid1,LOC107375932,LOC106530676 coding downstream 355384 3665449 ~ 3667197 (-)
AMCG00002819 NA coding downstream 643283 3378606 ~ 3379298 (-)
AMCG00002838 NA coding upstream 4375 4034370 ~ 4035880 (-)
AMCG00002841 nkx6.2,nkx6-2,LOC106576777,LOC106605004,LOC107745024 coding upstream 189181 4219176 ~ 4221061 (-)
AMCG00002844 NA coding upstream 252767 4282762 ~ 4298336 (-)
AMCG00002843 NA coding upstream 276331 4306326 ~ 4336926 (-)
AMCG00002851 NA coding upstream 552587 4582582 ~ 4600633 (-)
G138906 NA non-coding downstream 93963 3925167 ~ 3928618 (-)
G138873 NA non-coding downstream 644543 3376248 ~ 3378038 (-)
G138799 NA non-coding downstream 909499 3060561 ~ 3113082 (-)
G138742 NA non-coding downstream 1301877 2720412 ~ 2720704 (-)
G138738 NA non-coding downstream 1307893 2714377 ~ 2714688 (-)
G138948 NA non-coding upstream 45620 4075615 ~ 4076838 (-)
G139024 NA non-coding upstream 425797 4455792 ~ 4456002 (-)
G139025 NA non-coding upstream 435959 4465954 ~ 4466189 (-)
G139026 NA non-coding upstream 446469 4476464 ~ 4476663 (-)
G139027 LOC106576780,LOC103360772 non-coding upstream 465033 4495028 ~ 4495418 (-)
G138932 NA other downstream 19777 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 69257 3928761 ~ 3953324 (-)
G138741 NA other downstream 1303162 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 3097183 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 3200990 805760 ~ 821591 (-)
AMCG00002935 LOC106589936 other upstream 3032478 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 3318816 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 3901171 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 4455366 8485361 ~ 8494596 (-)
G140006 NA other upstream 4817037 8847032 ~ 8847840 (-)

Expression


Co-expression Network