AMCG00002837


Basic Information

Item Value
gene id AMCG00002837
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4008655 ~ 4016581 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002837
GCGTCGGGTATCCATGACAGCCcggttgttgttgttctggtGCTAATGGCGCCGCGGGCTGAATGGACCAGGACACGGCGAGGGAGGCCGGGCTCGGCAACTTCCGgagcatttaaataaagtacCTTTACAAGTCAGAAGTGCTACCATCCTCTCCAGCCATCTgcgttatttatttacttttaaccTTGGTGCCTATTTAATTCCGGACGTTacacccccctctctccttaCCAATATAGTCTGTCTGACAGGCCTCCTCTGGGACCGGGGGTTAGAGTAAGTGGGCCAACGGGGGGCGAGAACGATGCCAGACCCCCAGCAAGAGCGGCTGCAGGGCCGGGCTTCAGAGGGCCAGTCGAGACCGGAGAAGTGAACAGGGGGACAGGCAGGATGATATCGCGATACAGCAGACGCCCCGTGTCTCACAACCTGGAGATCCGGGGTCTGTCACGGAGCAGCCTGGAGCACCACCCCCTGCCCGAGGAGGAGGACGATGACGAAGAGGATGACCTGGCCCACCGCTATCTGCACAACCTGCGCAAGGCGGAGCACCCCTGCTACAGCGGCTCCGGGGGCTCCGACACGTCGGGCGGGTCGAGCTGCGCCACGGTGACGGCAGGCGACACGGCCAGGTCCTGGTCTGGCATCCACAGCTACACCGGCACCGGGCTCTCCACCGAGCGCAGCTCCGTGTTCTCCTGGGGCTACGATgaGTTCGACAAGGCGGCGTCCCGCCAGGTGCAGCAGATGTTCGAGGAGATTGACGTGGAGCTGTATGAGGGCGGGCCGGGGGGGCAGCCGCGCGGCCTGCAGGACGAGTGTCAGCACTGGAAGAGCCGGTTCCCCCATCTCAGGATCCTGGGCACCCAGCTGCTGTGCCCCATGGACGAGGGCTTCCAGTGGTTCTCCAGGGAGGAGCCTGGCAGCTGCCCCCCTACGGCCCCCAGCCAGAGCCAGGCCCGGGGTGGCGCAGAGCTGAGTGTGCAGGGCAGGAAGGCGGTGTTGTCCAGGCCGTGCGCCGACACAGGCAGCCCCCCCGGCCTGCGGTGCGAGGACGAGCCCCTGGTGATTGAGGCCGAGGGGCTGGTGGAGGAGTACCTGGCCTTCGACTGCAGGGATATGGAGGAGGAGTGGGAGAAGGGGCGCGCGGGGGCTCGGCGGCGGCCGGGGTTGCCCCCCGTGTCTCCCTACCGCTGCAGACGCCAGGCGGTGCTGGACCTGCTGTTCGACGAGGTGTGGAGGGAGCTGGTGGGCTGCATGGAGGAGCTGGTGCGCCGGCACTGGGAGGGCTGCGTCTCCGACGAGGAGAAGAACACAGTGACGGCGGCCCCAGCGCGGCCCGACTCGGACAGCCCGTTCCTGCCCGCCGTGCAGCCCAGGTTCAGCCAGCCAAGGCCCGCCCCCAGCCTGCAGCCGCAGTCCAACCGGGTGCTGGGGGGCCCCGGGGGGGGACATTACAATCTCAATGGCCTGATCGTCATCCATGGGATCCCGCTGCAGCAACGCACACTGGGGGCCCTGGACAAGATGCAGGACCATGAGGAGCGCCCATCCCTCCGGCCTGGTTCCAGTGCCGTCCCGTCCAGCAAGCCCTGCCCCCGCCGGCCACTGGAACAGAGCTCCTCCTCGCTCTTGCGCCCCCCCCAGTCCGCTCGTCGCCGCAACCCCCCACCGCGCAACCTGCACCCCCTCGGGCCGGGCCTGTCACAGTCCGGCACCCCTGGCTCCATGGACGAGGTCATCCGTGGGACCCGGCTGCCCACCGCCAGTGACCGCCTGGCCTCCCCCCCGATGCCCCTGAGCCGTAACCACCTCCTTCCCCCCATCAGCACGGGTGACCCCGAGACCCCCCGCCCAGCCCAGcgGCCGCGTGGCTCGTCCAGCCGGGCCCACAGCGCCGTGGCGGAGGACGGGGGAGGCCAGCCGCCCCGGGAGAGACTGCACACCCTGGACATGTTCTCCCGACCCAACACTACACACACCTTCCGGTCGGACACACCGTACCGGCGCTCCTTCACCATGCTAGATGCCACGGGCCCGGGCCGCGCCGGCAGGGCCTCCACAGGCACAGCTCTGCTGGTCCCGGCGCCCGTCCCCGCACGCTCCCACCCCCGGGGCGGCCTCACCTCGCGCAGCAGCAGGACGGGGCTCTAGCGCCCCCTCCCTGCAGAGACGGGCCGGTACTGCAGCCTTTGACCCGGCTGGCAGCAACGCACAGGACTCCCTGGGGCGACAGAGACGCACTGTACCGCAGCCCTTTCACAAACGGGTTCCTCTCACTGATTAGGAGTTTAAATCCTGAATGACACTGTAACCGGCTGCCAAAGACAAGAGGGAACGGGTGCGGCTGTCTGGTTTCACTCGATCCTCTTCTCATCCTGGGCCGCGGGGTCGTGGCGGGCCTGTGAGACAGACGGGCGAGGCTTGCGTTGCCGAAGACTTTGTCCATCCcagatgttgtgttttttcaacaCGCCCGCCATGCCGCTACAGCGAAGGAAACAGCCAAACATTTCCACTGACTAACAACGCGTAAAACAAGGCCTTCGCGTTATTCCCCCTCAGCCCTCGAGGCCGTCCTTCCGTTATTACCTTTCATAAGCCAAGCCAGCGCGTCTGTCCACCCGTGACACAGACGCTGCTTTCATCTTAATCTTCGTTTCAGCCTGAGATTAGAAAAAATAAGAGGTCCAAACATTTTGTGGGCCAGATAACGTttcatatgtacatatattgtAGTCTCGCTTTCTTTACTTCtgtaaatatatctttatatcaaaaataaaaataaactgatgcaataggattatttaaacaaaccGAGTTGTCTTTTCCTGCATGTTGGAATTCAGTCTCTGGGTTCGGAGGTACGAATGTTCATTCGTCTCCAGACAATCTGAGGATGTTGCCAACCTTCGAAGGCTCGTCACGTCACAATCGCATcgatttgttttctctcattaATAGAAATTGACAGtgaatactaaaccacacttcacATGTCccacataaattaaaatatttgaattgtatgctgcccattacttaaataaaatgtgttggcTATAAAGCCCTTCAATTGCCAGTTTCatttaaactatgtatttttaaaatatatgcttatactgataatttaattatgttctTCTGAAAGAGCCCTGAGCCCTTGCCAGCTTGCGTTTGGACCAA

Function

GO: NA

KEGG:

id description
K24653 FAM149; primary cilium assembly protein FAM149

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002837 True 3192 mRNA 0.61 14 4008655 4016581

Neighbor

gene id symbol gene type direction distance location
AMCG00002830 NA coding downstream 27657 3980819 ~ 3980998 (-)
AMCG00002829 NA coding downstream 29620 3977656 ~ 3979035 (-)
AMCG00002824 grid1,LOC107375932,LOC106530676 coding downstream 341458 3665449 ~ 3667197 (-)
AMCG00002819 NA coding downstream 629357 3378606 ~ 3379298 (-)
AMCG00002817 NA coding downstream 663321 3331717 ~ 3345334 (-)
AMCG00002836 NA coding upstream 6000 4022581 ~ 4029995 (-)
AMCG00002838 NA coding upstream 17789 4034370 ~ 4035880 (-)
AMCG00002841 nkx6.2,nkx6-2,LOC106576777,LOC106605004,LOC107745024 coding upstream 202595 4219176 ~ 4221061 (-)
AMCG00002844 NA coding upstream 266181 4282762 ~ 4298336 (-)
AMCG00002843 NA coding upstream 289745 4306326 ~ 4336926 (-)
G138906 NA non-coding downstream 80037 3925167 ~ 3928618 (-)
G138873 NA non-coding downstream 630617 3376248 ~ 3378038 (-)
G138799 NA non-coding downstream 895573 3060561 ~ 3113082 (-)
G138742 NA non-coding downstream 1287951 2720412 ~ 2720704 (-)
G138738 NA non-coding downstream 1293967 2714377 ~ 2714688 (-)
G138948 NA non-coding upstream 59034 4075615 ~ 4076838 (-)
G139024 NA non-coding upstream 439211 4455792 ~ 4456002 (-)
G139025 NA non-coding upstream 449373 4465954 ~ 4466189 (-)
G139026 NA non-coding upstream 459883 4476464 ~ 4476663 (-)
G139027 LOC106576780,LOC103360772 non-coding upstream 478447 4495028 ~ 4495418 (-)
G138932 NA other downstream 5851 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 55331 3928761 ~ 3953324 (-)
G138741 NA other downstream 1289236 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 3083257 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 3187064 805760 ~ 821591 (-)
AMCG00002935 LOC106589936 other upstream 3045892 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 3332230 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 3914585 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 4468780 8485361 ~ 8494596 (-)
G140006 NA other upstream 4830451 8847032 ~ 8847840 (-)

Expression


Co-expression Network