AMCG00002842 (valopa,LOC107570927)


Basic Information

Item Value
gene id AMCG00002842
gene name valopa,LOC107570927
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4253759 ~ 4267239 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002842
ATGGATGGCTTCAGAGTGGCTGTGAACGGGGGGGTCCTGTACACGGAGGAGACCCCGACTCCCCGGGACCCCTTCTCCGGCCCGGTGGAGTCCGTGGCGCGCTGGAACTTCTCCCTGCTGGCGGCGCTCATGTTCATCGTGACCTCGCTGTCCCTGTCCGAGAACTTCACCGTCATGCTGGTCACCTTCAGGTTCAAACAGCTCCGCCAGCCTCTCAATTACATCATTGTCAACCTGTCTGTGGCGGACTTTCTGGTGTCCCTCATCGGCGGCTCCATCAGCTTCCTAACCAACATCAAGGGCTACTTCTTCATGGGAGCCTGGGCGTGCGTGCTGGAGGGCTTTGCGGTCACCTTCTTCGGAATCGTCGCTCTCTGGTCCCTAGCTGTCCTCGCTTTTGAGCGGTTCTTCGTCATCTGCCGCCCTTTGGGGAATATCCGCCTTCGAGGGAAGCACGCCGCCTTCGGCCTGGTGTTCGTCTGGACCTTCTCCTTCATCTGGACCATCCCACCCACCATGGGATGGAGCAGCTACACGGTCAGCAAGATCGGCACGACTTGTGAACCGAACTGGTATTCAGGGAATTATTATGACCACACATACATCATCACTTTTTTCACTACCTGCTTCATCTTGCCCCTGGGGGTAATCATTGTGTCGTATGGAAAGCTTATGAGAAAGCTGAGGAAGGTCTCAAACACCCAAGGAAGGCTGGGCAGTACAAGGAAACCGGAAAGACAAGTCACACGGATGGTCATCGTCATGATCATGGCCTTTCTCATCGGTTGGACGCCGTACGCAGCCTTTTCGATCATCGTCACCGCCTGTCCCACGATCCGCCTGGATCCTCGCCTGGCAGCCGTCCCCGCCTTCTTCTCCAAAACGGCCACAGTTTACAACCCCATCATTTACGTGTTTATGAATAAACAGTTCAGGAAGTGTCTAATTCAGCTGTTCAGATGCAATACATCGGCTACAGACTTGAATCTCAACCAAACGACAGAGCGAGGGCCGATGACGGCGGAGAGCAACGAAGGGGAGATGTCTGCCATCGCGGCTCGCATCACCCTTTCCAGCAACAACGTCGAGAAAACCGAGGACGAACAAAGTCAAGGCAGTTCATTCGCTCAGTTGCCCATCCCCGAAAACAAAGTCTGTCCCATGTAG

Function

symbol description
valopa Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including digestive system; heart; integument; nervous system; and testis.

NR:

description
VA-opsin

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002842 True 1167 mRNA 0.55 5 4253759 4267239

Neighbor

gene id symbol gene type direction distance location
AMCG00002840 inpp5a,LOC106605012 coding upstream 66886 4162526 ~ 4186873 (+)
AMCG00002832 NA coding upstream 182484 4056439 ~ 4071275 (+)
AMCG00002831 NA coding upstream 201175 4043593 ~ 4052584 (+)
AMCG00002839 NA coding upstream 212358 4037710 ~ 4041401 (+)
AMCG00002835 LOC108269590,LOC107750875,LOC107583634,LOC107668614 coding upstream 220127 4031368 ~ 4033632 (+)
AMCG00002846 NA coding downstream 124115 4391354 ~ 4399257 (+)
AMCG00002845 NA coding downstream 183402 4450641 ~ 4466193 (+)
AMCG00002850 adgra1,LOC105025939,LOC106604940 coding downstream 223988 4491227 ~ 4513971 (+)
AMCG00002848 NA coding downstream 253823 4521062 ~ 4522684 (+)
AMCG00002847 LOC104962727 coding downstream 266547 4533786 ~ 4564541 (+)
G138946 NA non-coding upstream 176971 4072281 ~ 4076788 (+)
G138940 NA non-coding upstream 229014 4024442 ~ 4024745 (+)
G138927 NA non-coding upstream 263411 3989924 ~ 3990348 (+)
G138905 NA non-coding upstream 325105 3925169 ~ 3928654 (+)
G138903 NA non-coding upstream 526028 3727497 ~ 3727731 (+)
G139038 NA non-coding downstream 316626 4583865 ~ 4584167 (+)
G139044 NA non-coding downstream 359418 4626657 ~ 4712825 (+)
G139084 cpeb3 non-coding downstream 531374 4798613 ~ 4802244 (+)
G139170 NA non-coding downstream 800233 5067472 ~ 5068895 (+)
G139205 NA non-coding downstream 972111 5239350 ~ 5239490 (+)
G138941 NA other upstream 223835 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 657651 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 1137678 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 1759165 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 2843671 1406611 ~ 1410088 (+)
G139176 NA other downstream 829492 5096731 ~ 5098744 (+)
G139492 NA other downstream 1880509 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 2799616 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 3109448 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 3642013 7909252 ~ 7920908 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_02644087_02659250 VALOPA coding CI01180000 null 2643527 ~ 2659455 (-)