AMCG00002844


Basic Information

Item Value
gene id AMCG00002844
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4282762 ~ 4298336 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002844
TTTTCTGGAAAACCTTCAACTGGAAACAGATACAGTAACAATGATGCTGACAGCGACAATGAAGgggaaaatgatttaatttcactCCAACGCACCTATCACAAACTCGAGGGACAAAGGAAGGCCGAGGAGAAAGAGTCTCAGGACACGGTCCGAAAGCAAAGAGATCTGATTCGGCAGCTTGACGCCGAAAGGGACGAGATCTCGATCAGGCTCCAGGGGGCCGGGAGCCGTGGCAAGGAGTCCCAGGATCACAAGATGACAGTTGCGTTGAAATCTCTGGTCGAGAAGAGCGAAGACATCGACGAGCAAATtgcagatgaaaacaaaacactttccaCCCTTGAAAGAGAGATTAAAGAAGTTCAGAGAAAgctagagaaagaaagaaaagccaaTGCCTTGAAAGAAGATCCCAGCAGGAAAGTCCGTCGGCTAACAGACCAGCTAGCACAGGCAAACGGTAAGTTCGGTTCTTTATTATCCAGCAATTCCAGCCTCCGTGAAGAAATCCAAACCATGCGGGGGGAGAAAGGGAAGTTTCAGCAGCTGTACAATAAGCTTTATGTGAAAGTCCAGGAAAACCGAATAAAATCAGGAGAAGTTCTTAACGAGGCAAACGAATTCTACCACACAAGagaAGAGGCCCAGGCAAAAATCATACGCGTTCGAGACCAACAAGAGAAAGATGTGGAGCAGTACAACGCAGAGATGAGGGAGATCCGGAGAGAGCTCAACCACGCCCGCAAGGTCAAACGCTTCCTGCAGGAGAAGCGCAAAGAAAGGGAACCGGACCAAGAGTTTCTCAACGCCAAGGAGAAACTCGggGAGGATCTGAACTTTGCGCTCTTTAACTATGTCACGGAGCAGACAAGTGATATTGAAGATATTGAGGAAGATATTGAACAGCTCAAATTGAATATCGAGCTTCAGAGAGACCAAGATTTCTTAGTAAGCCAGGAGCATAAGGACATTATGAAAGCACTGGAAATTAACCTGCACGACACTACTGAGGCCTCCAGCAGATATAAAACAGATGTGGAGGAATATGAGAAGGTTTTAGCTCTGGTCAAAACAGGTGTTCAAGAACTGGCGGTAAAGGCGGGGGTGAACACCACATCCTCCGAACACTCGTTTGGATGGACAGACGGCGTGACTAACGAGAACATCCTCACATACCTGGGAGTGGTTGAACAAAAAGTCGGCGAACTCCTGGCCGTGTGGTCTTATCAGAAGTACCAGGCCGCTGAGAGGAAGGATGAAAGTGCAGAGTCTGTCCTCGCATATCTGGGTCTCAAAGCACCTGCAGATATTCCACAGTGTGAGGTCCATCTCCCATCCACAAGCGACGAAGAGTCTGGTCCCGAGGATTTAAAACCACTTTCTAAAGAAGAGCTGCAACAGAGAGCAATGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002844 True 1416 mRNA 0.48 12 4282762 4298336

Neighbor

gene id symbol gene type direction distance location
AMCG00002841 nkx6.2,nkx6-2,LOC106576777,LOC106605004,LOC107745024 coding downstream 61701 4219176 ~ 4221061 (-)
AMCG00002838 NA coding downstream 246882 4034370 ~ 4035880 (-)
AMCG00002836 NA coding downstream 252767 4022581 ~ 4029995 (-)
AMCG00002837 NA coding downstream 266181 4008655 ~ 4016581 (-)
AMCG00002830 NA coding downstream 301764 3980819 ~ 3980998 (-)
AMCG00002843 NA coding upstream 7990 4306326 ~ 4336926 (-)
AMCG00002851 NA coding upstream 284246 4582582 ~ 4600633 (-)
AMCG00002854 NA coding upstream 380371 4678707 ~ 4714306 (-)
AMCG00002855 NA coding upstream 448411 4746747 ~ 4750268 (-)
AMCG00002856 NA coding upstream 452269 4750605 ~ 4754918 (-)
G138948 NA non-coding downstream 205924 4075615 ~ 4076838 (-)
G138906 NA non-coding downstream 354144 3925167 ~ 3928618 (-)
G138873 NA non-coding downstream 904724 3376248 ~ 3378038 (-)
G138799 NA non-coding downstream 1169680 3060561 ~ 3113082 (-)
G138742 NA non-coding downstream 1562058 2720412 ~ 2720704 (-)
G139024 NA non-coding upstream 157456 4455792 ~ 4456002 (-)
G139025 NA non-coding upstream 167618 4465954 ~ 4466189 (-)
G139026 NA non-coding upstream 178128 4476464 ~ 4476663 (-)
G139027 LOC106576780,LOC103360772 non-coding upstream 196692 4495028 ~ 4495418 (-)
G139028 NA non-coding upstream 197826 4496162 ~ 4496362 (-)
G138932 NA other downstream 279958 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 329438 3928761 ~ 3953324 (-)
G138741 NA other downstream 1563343 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 3357364 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 3461171 805760 ~ 821591 (-)
AMCG00002935 LOC106589936 other upstream 2764137 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 3050475 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 3632830 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 4187025 8485361 ~ 8494596 (-)
G140006 NA other upstream 4548696 8847032 ~ 8847840 (-)

Expression


Co-expression Network