AMCG00002852 (LOC107562385,LOC104957417)


Basic Information

Item Value
gene id AMCG00002852
gene name LOC107562385,LOC104957417
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4763141 ~ 4767676 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002852
GCTGATTGGACGATCTTGtggtgttttcttgtttttgtgtttttctggagGTTTTTGGGGTCTTTTTGAAACTTTTTTTAGTTCCTGTGCGCACTTCCAGCAATCCCAGCCCCTGATTGGAGGCTGTGGACGGGGAACCCAGTGTAAGGGCCGTTTCAATTGGCAAGAGCGCCGGCCATGTGTGCGCTCCGCAGGCTTTTGTATACACAGCCCGAGCCCTTTAACAATGGGCGAAACAAAGTGCACGGCGCCCTGATTGCACTTCAAAAGGGGACATTTCTTGATTGTGCACAGGCCCCGCAGAGCTAAGCCCATCTCCTCATTGCAGACGTGGATGTCTTTTCCTCTTGCTCTCAGGGCCACTCCGACACCTCTCCGATGGAGCTAGAGGGCCAATGGTGGAAGGGACAGCTGGCTGCGGACATCTACCAAGCTCTCCGCTATAAAGAGCTGAAGTTGCCATCCTACAAAGGGCAGTCTCCTCAGCTCAGCCTGAGGCGCTACTTTGCAGACCTGATTGCCATCGTTAGCAATCGCTTCAGGCTGTGTCCGGCTGCCCGTCACCTGGCCGTCTACCTACTAGACCTGTTCATGGATCGCTATGATATATCCGTGCAACAGTTGCATGTGGTCGCACTGTCCTGTTTGCTTTTGGCAAGCAAGTTTGAAGAAAGAGAAGACCATGTGCCCAAACTGGAGCAGCTCAACAGCCTGGGATGCATGACCAACATGAACTTGGTGCTAACTAAGCAAAATCTTTTACACATGGAGCTGCTGTTGCTGGAAACGTTTCAGTGGAACCTGTATCTGCCAACTGCTGCCCACTTTATCGATTACTATCTGTCCATTGCTGTCCACGAGGGCGACCTGCACGACGGCTGGCCAATGGTTTGTCTGGAGAAAACGAGATTATACATGGCAAAATATGCCGATTATTTCTTGGAGGTTTCACTTCAAGTCGCTGCCGCTTGCGTCGCCTCCTCCAGAATCATTCTGAGACTCTCCCCTTCGTGGCCCACTCGCCTGCACCGCCTCACGGCCTACTCTTGGGATCTCCTCGTGGCATGTGTGGAGCGGCTCTTAATGGCACATGATAACGACGTCAAAGAAGCGAGCAAACAGAAGTGCCAGCAGCCCAGCCCCCAGCCCGGGCAGGCGGTCTACCCAGCGCAGACGCCAGTGAACGCCCCGCCTCAGATACAGCCGCACGTTTCTCAGTACATTCAACGGCAGCCGCTTCAGTACCCGCAGCAGAACTGCCAGCAGATCATGACCACTGGGCACATGCCTTCTTACACGATCCAGTCGCATCCCACCAGTTTACAAGCCAACGTTCAGCCTCACGGACACATACAAGCGATGACGGGCGTGACCATCCCAGCTCCCCTGGACGTGAAGGTCAGCTTACCCTACGGCAGGGGCTACCAGGTTAACGGGCACTACACCTGTGCAGCACCTTGTTTTGATCGGTGATCAATCCCTGCGTGAGCCAGGggaggttattattattttttttttggcagattgGTTGGAGGACTGTTTCTTAAACCTGTGAGCCATAAGGATATAATGTAGATGGAAAAAcactggttttaattttaaagaaagagagcgagagagagggggaaaaaatgttcaGCACTGTATTATGTAGCGTAGGATGTAAATTGAAAGTTTGTGCAATATCATTTAATGTATGATGGATgtacacgttttttttttgtaatgtctcCGTTTTTAAAAACGATCCCCTTTTAAATAGTAATTTACCAAATAGGCCTTGAAACCTATGTTCACATTCTGGACTGCTACAAGGTTTGCGTTTCAGGTATAAAATAAGGTCAGCTGACCTAAACCTTGTTAATTGTGACTTTAAGAAGAGAAAGTTCTACTAACCTACGGTATTCATATCAAAGCTACCtcaaaaaatgaatgtacacttattttctgtattcCGTTTATATTTAATCTGATGTGGCCTGTTTTCCCGATGAAGTTCCCAGACAGTGTTACTGGGACTATAGTTCTCCTTTGATCTGGAGTATTTTCTTTGCATGCAGTTTCCACATTATGCTACTTCGATTTACAGTATACTACCTCtgaaacaaaactttaaagGTTATCAGTATATTGATTCTTTAGtttttgcataatatatattttgcaatagCAGAAATGTGATACACAATGCTCCAGTAAGAAGtaaaaccatttcaaatttGCATCTTCATGTTACTGAATGTGTAAATCCTCAGTGAGTGCTGtgcacttttaaataaaagagtCGGTTGCATTCTTTTTATTCTATCAACTGTGTAACCAATTATTCTGTAAGAAACTATTGTGTTCTGGTAAATTCTTCAAAATATGACAAGCATTTAGGAATACCAACAGAgttataatatatttcaaaaatctATGTAAACAGATGGAGCTCTGAACCCAGGATGTGTCTATGGTGTTTCTTGTGTCTTCagtttcaatattaaaaagtaatttcaaggctagtatttatattaaatagttACATGGAACCAAACATTCTGTGAACTATATTTCTCCAGAAAAAGTTTGTCAATGGCAAAAGTTTCCCGTATGGATATAGCAGTGACAATGTTTTCCGGAAAGGTGAAACAACATGATGGTTTGTGCACAGGGTTGTAATGATTGGTTTTGACCCTGGTTTCCAACACCATGATGTTCACCTTTTCAtcataacaatttaatttagtcttgatttttttaatcctgAATGTTACTATTAAAACAAGAGTGGC

Function

NR:

description
PREDICTED: cyclin-J-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002852 True 2777 mRNA 0.44 6 4763141 4767676

Neighbor

gene id symbol gene type direction distance location
AMCG00002853 NA coding upstream 15000 4734674 ~ 4748141 (+)
AMCG00002849 NA coding upstream 188975 4568555 ~ 4574166 (+)
AMCG00002847 LOC104962727 coding upstream 198600 4533786 ~ 4564541 (+)
AMCG00002848 NA coding upstream 240457 4521062 ~ 4522684 (+)
AMCG00002850 adgra1,LOC105025939,LOC106604940 coding upstream 249170 4491227 ~ 4513971 (+)
AMCG00002858 btaf1,LOC107679172,LOC106604898 coding downstream 7695 4775371 ~ 4796304 (+)
AMCG00002861 march5,LOC107549154 coding downstream 83114 4850790 ~ 4867571 (+)
AMCG00002857 march5,LOC107586100,LOC107549154,LOC107676368 coding downstream 107207 4874883 ~ 4877336 (+)
AMCG00002863 LOC104965006 coding downstream 140825 4908501 ~ 4918521 (+)
AMCG00002862 NA coding downstream 160754 4928430 ~ 4933205 (+)
G139044 NA non-coding upstream 50316 4626657 ~ 4712825 (+)
G139038 NA non-coding upstream 178974 4583865 ~ 4584167 (+)
G138946 NA non-coding upstream 686353 4072281 ~ 4076788 (+)
G138940 NA non-coding upstream 738396 4024442 ~ 4024745 (+)
G138927 NA non-coding upstream 772793 3989924 ~ 3990348 (+)
G139084 cpeb3 non-coding downstream 30937 4798613 ~ 4802244 (+)
G139170 NA non-coding downstream 299796 5067472 ~ 5068895 (+)
G139205 NA non-coding downstream 471674 5239350 ~ 5239490 (+)
G139238 NA non-coding downstream 598759 5366435 ~ 5366683 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding downstream 672101 5439777 ~ 5442279 (+)
G138941 NA other upstream 733217 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 1167033 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 1647060 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 2268547 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 3353053 1406611 ~ 1410088 (+)
G139176 NA other downstream 329055 5096731 ~ 5098744 (+)
G139492 NA other downstream 1380072 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 2299179 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 2609011 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 3141576 7909252 ~ 7920908 (+)

Expression


Co-expression Network