AMCG00002853


Basic Information

Item Value
gene id AMCG00002853
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4734674 ~ 4748141 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002853
GCGCTGCTGAAGAGGCGCACAGAGGCGCACAGAGGCGCACAGGACGCGGGGCTCAGACACACCCGGCCGAGCGCACCGTCCACACACGCACATGCGGATCCGTCTCACCGGGGTGTGCAGCCACTGGAGATGGACAAATTGAGTAAAATCACTGCTCCCGCTGGGGAGAAGCTAAGGCAACTTCAAAAGATGGTCCACGACATCAAGAAGAATGATGGAAGCATCATGAACAAGTTCAAGAAGTTAACCAACAAACCGCCGCCACCATCAGTGCCAACCAGGGACTATCCAGaTGATGAAGAGCAGCAATGGTCGGATTCAGAGTTTGACAGCGATTATGAGAATCCAGATGACCCTTCAGAGACCTATGAAGCACCGCAGGAGGACAACAATTACGAGCCCCCCCCCAAGGAGGGGAAACCGAAGCCCAACAGAACCCCGGCTCTGGATCTGTCCAAAGGAGAATACCTAGACAACAGAGCTCCCACGAATAAGCCCCGCCCCTCAAAGCCCTCCCAACCAATCACACCCCAGAAAGGACTGAAACCTGCACGGCCAATGAAGCCCCACAATCCAGTGCAGGATGATGAATACGTTTGCCCGAAAGACGATGAGGACGATGATAATTATATTGATCCTTCAGAGAAGTCGGCCGCTACAGGAGTGCAATATAAATCCACAGCCCCCCCCATCATTAATAGAGTTCTGAAACCACACATGACTCGACATCCGGTTCCCAGCCCTGATAATCAAGGAGATGCCACCGCCGCCTGCCAGGAACCTATTGACGAGGATGAGTATGAAgcaCACACCACTGCCACCAGTAAAGCCACTCGGCCGATCCCCCAGAAACGCAGTGTCATGAACACGCCAGTGGACCCCTCTCCGGCCGAAGCTGCCAGAGCCAAGCctccatttaaactgaaaaccagCCCATCCCATGCCAAACTCCCTGCAGTCGCAAACCGAGGCACCCTGTCACGGAACGGGCCTACCAGTGCAGAACAGGACGCTGGCGTTTACAGCAAAGTGTGGTACGCCAGCACCAGTGAACGGAAGATTGCAGAGGAAGCCTTGGTCAAATCAAATAAGGATGGATCGTTCCTGGTGAGGAAGAGTTCCGGTCAGGACGTGAAACAGCCGTACACTTTAGTTGTGTTCTATAAGAAGAGGGTCTACAACATCCCCGTGCGGTACATCGAGTCGTCTCGGCAGTACGCGCTCGGCAGGGAGAAGAGTGGAGAAGAGCACTTCAGCAGCGTTGTAGATATGATTGAGAACCACCAGCGGCAGCCTCTCGTTCTGATCGACAGCCAGAACAACACCAAGGACTCCACCAAACTCAAGTACCCCGTGAAGGTTTAACCGCTCCAATATCTTTGCGACGGAAAGCTCGATCTCATTGCAACGGTTGAGGTTCCTGTCGGGAAAGATTGTAAAGGTTGTACAGACTGCAGGCCAGTGTGTTTTACTGTAATAGATTTGGAGTGCGATTGTTAAAGAAAGCACTGTTGCCTTTTCTTAACATGGACTCAAATTACAGTGTCGATACACGTTTAGTGTGATGTATATTTTGACTACTTTGACAATGTGATGGGtgaccatttaaaatatataaagattatGCATTGAATTATGTTAATAtgtatgtgaaataaaatgtaagtttttgtaatgctcttgtataaaagggtttatttttccctgtagtaaatatacagatgtttaaactatactttatttaaatcagctattcatctttacattttctggaaataattttaatacaacTTAACTTGTACACTATCTATTTGAAAATAGTTGGAGTTCATAAAGTTTTACAGTGATCAGATAAAACACATGAAGtggaacaaaacatttaaaaccacaaataaagacattctgaatttaaaaatgattctgCACAATTATGAAGCTTGGTTTAATTCAGGGTTTTGAAGTATCGTAGAGACTCAACCATATAGTTTTGGCATTGCCTACCTTTACCAATCACAATTTGTTTAGATAAAGACTGAGTTCTCCCTTAGCTTGGTTTTATTGAATTTCAAATGTCTGTCAGAAAAATACAGGGTTGAGTTATTGCAGTCATGTACTGTAGGGAGAAATAGACAATCTATGATGACGTTACTAAAAACAG

Function

GO: NA

KEGG:

id description
K07371 BLNK; B-cell linker protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002853 True 2158 mRNA 0.46 16 4734674 4748141

Neighbor

gene id symbol gene type direction distance location
AMCG00002849 NA coding upstream 160508 4568555 ~ 4574166 (+)
AMCG00002847 LOC104962727 coding upstream 170133 4533786 ~ 4564541 (+)
AMCG00002848 NA coding upstream 211990 4521062 ~ 4522684 (+)
AMCG00002850 adgra1,LOC105025939,LOC106604940 coding upstream 220703 4491227 ~ 4513971 (+)
AMCG00002845 NA coding upstream 268481 4450641 ~ 4466193 (+)
AMCG00002852 LOC107562385,LOC104957417 coding downstream 15000 4763141 ~ 4767676 (+)
AMCG00002858 btaf1,LOC107679172,LOC106604898 coding downstream 27230 4775371 ~ 4796304 (+)
AMCG00002861 march5,LOC107549154 coding downstream 102649 4850790 ~ 4867571 (+)
AMCG00002857 march5,LOC107586100,LOC107549154,LOC107676368 coding downstream 126742 4874883 ~ 4877336 (+)
AMCG00002863 LOC104965006 coding downstream 160360 4908501 ~ 4918521 (+)
G139044 NA non-coding upstream 21849 4626657 ~ 4712825 (+)
G139038 NA non-coding upstream 150507 4583865 ~ 4584167 (+)
G138946 NA non-coding upstream 657886 4072281 ~ 4076788 (+)
G138940 NA non-coding upstream 709929 4024442 ~ 4024745 (+)
G138927 NA non-coding upstream 744326 3989924 ~ 3990348 (+)
G139084 cpeb3 non-coding downstream 50472 4798613 ~ 4802244 (+)
G139170 NA non-coding downstream 319331 5067472 ~ 5068895 (+)
G139205 NA non-coding downstream 491209 5239350 ~ 5239490 (+)
G139238 NA non-coding downstream 618294 5366435 ~ 5366683 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding downstream 691636 5439777 ~ 5442279 (+)
G138941 NA other upstream 704750 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 1138566 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 1618593 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 2240080 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 3324586 1406611 ~ 1410088 (+)
G139176 NA other downstream 348590 5096731 ~ 5098744 (+)
G139492 NA other downstream 1399607 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 2318714 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 2628546 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 3161111 7909252 ~ 7920908 (+)

Expression


Co-expression Network