AMCG00002869


Basic Information

Item Value
gene id AMCG00002869
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5054132 ~ 5060548 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002869
GGGCAGCACAGCTCTAGTGTGGTGAGTCGACCTGCCGTCCTCTGAACTCCACGTCACACTTCCACGTCCGCGCAGCGCGGCGGAGGGACGGCCGGCCTGGGGCTCAGTGCGCCGGGGACATGTAGCGGCTCAGTGCGGCGCCGTCGGCCTCGGGGATGGAGCTGGAAGAGGCCTTTCATGTGGTGGGGGAGTTCGGGAGGCACCAGAAACGACTGGCCGCTGTGCTGGTCCTGCTGCAGGTTTATATGGCCTGCCAGTCCATGCTCATAGTCCTGGTTGGTGCAATTCCTGAGTATCACCTACAGACAGCAGAGACCCCCAGCAATGAGGAGGACTTCAACAAGCTGGTGGTCTTTGAGGACCTCAGCTCCATCGTCACAGAGTGGTTTTTAATCGGACGCAATGCCTACAAGGTGAGCTTGGCCAGTTCTGTGTTCTTCGCTGGCGTTCTGATCGGGAACGTCCTGTTCGCTCCCCTTTCGGACAAGATCGGGAGGAGACCAGTGTTTCTTTCAGGTTTGCTTTTTGAGGTGCTTTTTGGATATGCCACCGCGTTTGCCCCCAGTTATGAAGTGTTTGTGGTTTCCAGACTCCTAGTGGGCATGATGAATGGCGGCATGGCTCTGGTGGCCTTTGTGCTGACACAGGAGTATGTGGGCAAATCATACTGGGCGATGACAGGTACCTTGACCAATATGATGTTTGCCGTGGGAATAGCGGTGTTCGCAGCCTTGGGATACTGCATCCGACCCTGGCGCAGTCTGGCCATCGCTGTAAACTCCCCGGGCGCGTTGCTTTTCCTTCTCTGTTTGACTCTCCCCGAGTCTCCACGGTGGCTGTACGCTCAGGGGCTCACGCGGAAAGCGGAAGAAGTTATGGAGTACCTGGCGCTCAGAAACGGTAAGGCGGGCGCGACGGTGAAGCTGAAGCCGTGTGCCGGCGCCCTGAGGACCGGCGATGCCAAGCACGGCCTGTCGGACCTGGTCAGGCACCCCGTGCTGCGCTGGAGGACGGTCATCCTCATGTTCGTCTGGTATGCCTGCAGTTTGGTGTATTACGGGTTAACGATGAACGCGAGTGAGCAGAAAGGAAACCGCTATGTAAACGTGGCGATGTACGGCCTTGTGGAACTGCCGGCTTACCCGCTCTGCATGTACTTCATTAACAAACCGTGggCAGGAAGACGGAAAACAACAGCTGGCTTCTTGATGTTTGCAGGCTCTTCCTGTctggttacaatgtttttatcaGATAGTTTTGATTCTTGGATCAACATTACTTCTTTGGCTTTGTTGGGCAAGCTGATGATCAGTGCTGCCTTCAACATCGTGTACATATACACATCTGAACTCTATCCCACTGTGATAAGGAACGCTGGGCTGGGAGTTTGCTCGATGTCCTGCAGATTTGGTGGAATATTCGCTCCTTTCGTGCCTTCCATGAAAAGCCTCCACCAGTCCATGCCGTTCGTGGTGTTTGGTCTGACGGGTATATCGGCCGGCTGCCTGGACCTTCTCCTGCCCGAGACGCTCAACAAGCCCATCGCAGAGACCATCGAGGACCTGCACACTCCGGTTTATCAGCGCATAGTTTATCCATTTGGAGAAGATAAGTCAAACTccaaacacaaagcacagagatGAGGAAGGTTCCCCACTCTGCCGAGCGCTCTGCTGGGTGGGCCGGATTGAggggagacacacacacgcttgTGCACACACAGTCCACCCCTGGACTGCCGAGGCCTGCTGTGAAAGATGCATTTGGCAGACCTGCACTATATTGAgagggttttaaaaatgttaattcaatctaattacattttatagagTAAGATGCTCTGCTACTGATGAATATATATCTCAACAGAGCCATTAAGGGCTGTTTGGTCAAAACTGGACAGAAAAGTCACCCACGAGCACATTATGCAGCATAAAGTGTTGAGAGTGCACCTTTAGTGGCTGTCTAAATACATGTATGTGCAATGCGTGGTGGCACCTAGAAAGCTGCCTGTATGTGGACAAAGTATTTTCCGTAAAGCTGCCTGGACTGTGTTGGTCGTGCTTTTCAGAAGAGTTCTCTCCTGCCAAAATGTGATGTCAGTGAGGCAGGGGGTTGTGGGTAATCATATAGGAACTCCTCAGTGGCCATTGTTTGGTGCCTTTTAGGACAGTGCCTTAGGTTTACACTGACTATACCTCAGTGGACTTGAACATTAAGTGTCATTTATCGGGACCAAGCTGTCAGTGTATTGCCAAAGTTGTTCGAGACCCCCAGCATCGTTTTCTAGATTTCTACCGGTGTGGTCTGCAGGTCAGATCTTTACTTTTCACCTTGCACTGTAAAGTTGAaagattgttttgtaaatgtgttttacaaattaaaatgataccTTTTTCCCTCTCAAATGGTCGTCTCAAGCAGTTGGCATGTGTTAAATAATTGCATCGGGAGAGAGGGTGGGAAAGGCACAAATGAATGAAGCGTGtacaaatattgaataatttcGGCATCGGGACGATCTTGGCTCCCAGGTGTCCGtgtctcttgtttgtttttgcctttttctcAATGTTGAGGATTTACCTGCG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
K08202 SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002869 True 2591 mRNA 0.51 12 5054132 5060548

Neighbor

gene id symbol gene type direction distance location
AMCG00002865 ide coding downstream 147930 4879277 ~ 4906202 (-)
AMCG00002860 NA coding downstream 206412 4837720 ~ 4847720 (-)
AMCG00002859 cpeb3,LOC106604870 coding downstream 228101 4798587 ~ 4826031 (-)
AMCG00002856 NA coding downstream 299214 4750605 ~ 4754918 (-)
AMCG00002855 NA coding downstream 303864 4746747 ~ 4750268 (-)
AMCG00002870 reep3 coding upstream 7897 5068445 ~ 5090402 (-)
AMCG00002874 NA coding upstream 129572 5190120 ~ 5196693 (-)
AMCG00002873 NA coding upstream 180212 5240760 ~ 5241506 (-)
AMCG00002875 NA coding upstream 202202 5262750 ~ 5276075 (-)
AMCG00002876 NA coding upstream 229132 5289680 ~ 5297202 (-)
G139039 NA non-coding downstream 469960 4583865 ~ 4584172 (-)
G139029 NA non-coding downstream 542825 4507504 ~ 4511307 (-)
G139028 NA non-coding downstream 557770 4496162 ~ 4496362 (-)
G139027 LOC106576780,LOC103360772 non-coding downstream 558714 4495028 ~ 4495418 (-)
G139026 NA non-coding downstream 577469 4476464 ~ 4476663 (-)
G139249 NA non-coding upstream 335791 5396339 ~ 5396559 (-)
G139496 NA non-coding upstream 1097195 6157743 ~ 6158763 (-)
G139593 LOC100846954,LOC107575789 non-coding upstream 1421719 6482267 ~ 6510125 (-)
G139639 NA non-coding upstream 1941117 7001665 ~ 7073536 (-)
G139668 NA non-coding upstream 2158321 7218869 ~ 7219192 (-)
G138932 NA other downstream 1051328 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 1100808 3928761 ~ 3953324 (-)
G138741 NA other downstream 2334713 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 4128734 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 4232541 805760 ~ 821591 (-)
AMCG00002935 LOC106589936 other upstream 2001925 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 2288263 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 2870618 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 3424813 8485361 ~ 8494596 (-)
G140006 NA other upstream 3786484 8847032 ~ 8847840 (-)

Expression


Co-expression Network