AMCG00002870 (reep3)


Basic Information

Item Value
gene id AMCG00002870
gene name reep3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5068445 ~ 5090402 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002870
AGTTCACCGAGGCCGCCCAGCCGGCCCCCTTCGGCAGCCCagggccctctctctccctctgcagcgGCCGACCGAGGCGAGGAGAAAGATGGTGTCGTGGATGATCTCCAAAGCAGTCGTGGTGTCGTGATGCCCGGGAGTGTCCTGGGTGAGGCCGGGCCCCGGCGTGGCGCCTCGCCGCTGTTTTTTGGAACGTTATACCCTGCATATTATTCCTACAAGGCAGTGAAAACCAAGAATGTGAAAGAATATGTTCGCTGGATGATGTACTGGATTGTCTTTGCTCTCTATACAGTCGTTGAAACGATTGCAGACCTTGCAATATCTTGgtttcCACTCTATTATGAAATCAAGATTGCGTTTGTGATTTGGTTGCTGTCTCCGTACACTAGAGGGGCCAGTCTTATCTACCGGAAATTCCTGCACCCTCTTCTGACATCCAGGGAAAGGgAAATTGATGATTACATCGTTCAAGCCAAGGAACGTAGCTATGAAACCATGGTCAAGTTTGGCAGGCAAGGCTTAAGCATAGCGGCCACTGCAGCTGTTTCTGCAGCTGGTCAAGGTGCCATTTCTGAGCGGCTAAAAAGCTTCAGTATGCACGATCTGACGCAGATCCAGGGCGATGAGCCAGTGCACCAGCAATATCCAGCACTTGATTCTAGAAAGAAAGGCAAGAACCCCGCGTTGGAGTCAGGTTATGCCTATCAGTATGAGCAGGATGACCCGGAGGACCGGACCGACGACGACTTTGAGGGCACTTTGTCCGAGGACGAGGCTTTGGCGCAGCGGGGACTGCGTCGCTCTCAGAGTGTGAAAATTACGAGATCGCGAATTAAGAAAGAGAATCGTTATGGATCCCTGAAGATTAAAGGAAAACGACGACCAGGAATTAGTTCTGTGAACTACGGCGTA

Function

symbol description
reep3 Predicted to enable microtubule binding activity. Involved in mitotic nuclear membrane reassembly. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic microtubule; endoplasmic reticulum membrane; and endoplasmic reticulum tubular network.

NR:

description
PREDICTED: receptor expression-enhancing protein 3

GO: NA

KEGG:

id description
K17338 REEP1_2_3_4; receptor expression-enhancing protein 1/2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002870 True 915 mRNA 0.52 9 5068445 5090402

Neighbor

gene id symbol gene type direction distance location
AMCG00002869 NA coding downstream 7897 5054132 ~ 5060548 (-)
AMCG00002865 ide coding downstream 162243 4879277 ~ 4906202 (-)
AMCG00002860 NA coding downstream 220725 4837720 ~ 4847720 (-)
AMCG00002859 cpeb3,LOC106604870 coding downstream 242414 4798587 ~ 4826031 (-)
AMCG00002856 NA coding downstream 313527 4750605 ~ 4754918 (-)
AMCG00002874 NA coding upstream 99718 5190120 ~ 5196693 (-)
AMCG00002873 NA coding upstream 150358 5240760 ~ 5241506 (-)
AMCG00002875 NA coding upstream 172348 5262750 ~ 5276075 (-)
AMCG00002876 NA coding upstream 199278 5289680 ~ 5297202 (-)
AMCG00002879 arid5b,LOC106577140,LOC102237181,LOC102783177 coding upstream 214509 5304911 ~ 5315169 (-)
G139039 NA non-coding downstream 484273 4583865 ~ 4584172 (-)
G139029 NA non-coding downstream 557138 4507504 ~ 4511307 (-)
G139028 NA non-coding downstream 572083 4496162 ~ 4496362 (-)
G139027 LOC106576780,LOC103360772 non-coding downstream 573027 4495028 ~ 4495418 (-)
G139026 NA non-coding downstream 591782 4476464 ~ 4476663 (-)
G139249 NA non-coding upstream 305937 5396339 ~ 5396559 (-)
G139496 NA non-coding upstream 1067341 6157743 ~ 6158763 (-)
G139593 LOC100846954,LOC107575789 non-coding upstream 1391865 6482267 ~ 6510125 (-)
G139639 NA non-coding upstream 1911263 7001665 ~ 7073536 (-)
G139668 NA non-coding upstream 2128467 7218869 ~ 7219192 (-)
G138932 NA other downstream 1065641 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 1115121 3928761 ~ 3953324 (-)
G138741 NA other downstream 2349026 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 4143047 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 4246854 805760 ~ 821591 (-)
AMCG00002935 LOC106589936 other upstream 1972071 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 2258409 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 2840764 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 3394959 8485361 ~ 8494596 (-)
G140006 NA other upstream 3756630 8847032 ~ 8847840 (-)

Expression


Co-expression Network