AMCG00002873


Basic Information

Item Value
gene id AMCG00002873
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5240760 ~ 5241506 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002873
ATGCCCCGGGACGACATGACCTCCCTCATCCAGAAGATCGCACGGCAGGCCCGCATCACGTTCAAGAGCTGCGCCGCGTCCCCCCTGGGCGAGGCCAGCACGGAGTTCCTGGAGAACCAGGGCAAGCTCGGCAGCCTGCTGTCCGAGATCACCGCGGCGGACCTCAAGATCGCGCCCAGGAAAGTCGACGGCTCCTCGGTGTCGGTGGCGCACAGCCCCCCGGTCACCTACATGCACATCTGCGAGAACGACGCCTTCAGCATGGGGGTGTTCCTGCTGAAGAGCGGCAGCTCCATCCCCCTGCACGACCACCCGGGCATGAACGGCATGCTCAAAGTGCTGTACGGCAAGGTCCGGATCAGCTGCTTTGACAAGTTGGAGCAGCCACCTGATGCCGCCACCGAGGCGCAGCTCAACCCGCCCCCGCTGCCCTACCAGAACCAGGCGCTGCGGAGGTCCATCCTGAGGTCAATCGGGGAGTACTCGGAGGGCAGCGGCCCCTGCGTCCTAACCCCCCACAAAGACAACCTTCATCAGATCGATGCCGTGGACGGACCTACGGCTTTCCTAGACATTTTGGCCCCCCCCTACGACCCCGACGACGGCAGAGACTGTCACTACTACAAAGTGCTGCAGCCGGTGTCGCTTCCCCCGGAGCCGCAGGAGATCTGGCTGCTGGAGATCCCGCAGCCCGCGGAGTTCTGGTGCGGTGGGGAAGCCTACCCCGGCCCAAAGGTCACCCTGTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0047800 cysteamine dioxygenase activity molecular_function

KEGG:

id description
K10712 ADO; cysteamine dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002873 True 747 mRNA 0.65 1 5240760 5241506

Neighbor

gene id symbol gene type direction distance location
AMCG00002874 NA coding downstream 44067 5190120 ~ 5196693 (-)
AMCG00002870 reep3 coding downstream 150358 5068445 ~ 5090402 (-)
AMCG00002869 NA coding downstream 180212 5054132 ~ 5060548 (-)
AMCG00002865 ide coding downstream 334558 4879277 ~ 4906202 (-)
AMCG00002860 NA coding downstream 393040 4837720 ~ 4847720 (-)
AMCG00002875 NA coding upstream 21244 5262750 ~ 5276075 (-)
AMCG00002876 NA coding upstream 48174 5289680 ~ 5297202 (-)
AMCG00002879 arid5b,LOC106577140,LOC102237181,LOC102783177 coding upstream 63405 5304911 ~ 5315169 (-)
AMCG00002878 arid5b coding upstream 105937 5347443 ~ 5354987 (-)
AMCG00002877 NA coding upstream 125309 5366815 ~ 5379558 (-)
G139039 NA non-coding downstream 656588 4583865 ~ 4584172 (-)
G139029 NA non-coding downstream 729453 4507504 ~ 4511307 (-)
G139028 NA non-coding downstream 744398 4496162 ~ 4496362 (-)
G139027 LOC106576780,LOC103360772 non-coding downstream 745342 4495028 ~ 4495418 (-)
G139026 NA non-coding downstream 764097 4476464 ~ 4476663 (-)
G139249 NA non-coding upstream 154833 5396339 ~ 5396559 (-)
G139496 NA non-coding upstream 916237 6157743 ~ 6158763 (-)
G139593 LOC100846954,LOC107575789 non-coding upstream 1240761 6482267 ~ 6510125 (-)
G139639 NA non-coding upstream 1760159 7001665 ~ 7073536 (-)
G139668 NA non-coding upstream 1977363 7218869 ~ 7219192 (-)
G138932 NA other downstream 1237956 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 1287436 3928761 ~ 3953324 (-)
G138741 NA other downstream 2521341 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 4315362 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 4419169 805760 ~ 821591 (-)
AMCG00002935 LOC106589936 other upstream 1820967 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 2107305 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 2689660 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 3243855 8485361 ~ 8494596 (-)
G140006 NA other upstream 3605526 8847032 ~ 8847840 (-)

Expression


Co-expression Network