AMCG00002874


Basic Information

Item Value
gene id AMCG00002874
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5190120 ~ 5196693 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002874
GGCGCTGGACGGGAAGTGGCCGTGCTCCAGCAGCGGGACTCCTCCGAGCGCTCCGGCCGAGCAGCAGCGGTCCCGGTCGGCAGAGCTGAGCCTGATGCGCGTCGCGGGGCCACGGTTGCGTTTCCCATGTAGCGGCCCGTCGTGAGGACAGTCCAGATGGAGGTGGTGGAGAGTCCCCTGAACCTCGCCCATCAGCAGAGCAGGAAGGCCGAGCGACTGATGGCGGTGGGCAAATATGAAGAAGCCATCGCTTGCCATGGAAAGGCAGCAGACTTCCTCAGCGAAGCTATGAAGCTGACAAAGTGTGATCAGGCTCAGCTCTCCCTGGAGCTCCAGAGGGACAGTCACATCAAGCAGCAACGCCTGATTGAGGAGAAGTGGAAACGGGCCAAACGAGAGGAGAGGCAGCGGACCCAGCACAGCACCCCCCCGGCGGACAGGGAGCTGCCCGGGCAGCTGCAGGCATCGCCCGGCCCCTCCCCCGGTGCGGTGGCCGTCCCGGAGGCCAGGGAGCGCGAGTACGACACCTGGCTGTACCTGCTCAAGAACAAGGGGGCGGCCCCGGAGCCCTGCCCCCTCACCAGCAGCAAGACCCCGAAGGACGACCGGACCCGGCTGGAGGAGCAAGAGACGGCCATCGCCGACCTCAGGAAGCTGGTGGACTTCCTCCTGGTGGAGAATGAGCGGCTGACCCAGGAGAACGAGCGCCTGCGGGGCGAGAACACGCGGCTGAAGAGGGCGCCGCTGGAGAGGGAGCCGTACGCCGACGCCGACTTCGTGGAGAAGTCCGAGCTCTGGGGCCTGGCGCAGCCCTCGGAGGACAGGAAGGCCAAGGACATTCCAATCCCACATCTCCCGCCCCTGGAGATGCCCACTCAGGACATCGCCCTGGCCGACCTCCCCGCCCTCGAGCTCCCTGAGGACTTCCAGAGCGAACTGCAGGAGCTCATGGACCGGGACAAGCAATAGCCACCGCTGTGCGGGCGAGACGAGGACACAACGAGAGCGAGACTCGCTGGGAAGCACACAAGGCTGTCGGACACAGGAGAGGATAGACCACCACTAGGAAGAGGACATTGGGAGCCAACAGATGGAAAATAAAGCTGCCACACGGTGGCACTGTTGACTGAACTTCAATAGTGACTTCTCTCCTCCCAAGGTACTACAGCTGTTTCAGCTCAAATTATCAGTAGGATTTTGTGCCTTTGCTGACATTTATTCACAGTATGGTTGTGTTGTGGGTCCCACAGAGAAATCAAGTGAAGACTTTATCTCACGTTTCCTAAACACTTTCCCAAATAGATTGTCCATTGACCAGCTGAGATCCAATATTTAGTTTTCCCGTGTCGTTCTTAATTTGTCAACTTGGTAATTGTGCTGTTGCTCGTAGAACATGGCTTTTCAATACGATGTCCTTCCCAGTGATACAGAAGCACATGGGCGTCTGCGCCTGCAGGTCCACAGAAACATGATCGATATAGCTTCCTATTGGATagacagtacacacacacacacacacacacacaataagcaCTGTGATCTGTGTTCATAGTCTGTTGGATTCTTCATTGTCATCGTGTGAATTTGGGACGGGTGAAAGTCCAGCAACACAAGCCGTTTCACTCGTTCATTCACAGTAACCCAGACTGAATTTCTACCTGTCCAGAGATGTGCAGGTCTGAAGATCCATTACTAACAGTACACGTGTGTCATGTGTGTGGCAGGTGTATAGTACATGTACCTTCCCCAGCCAGGTGACTGGCCCCTCCTCTGACAGGTGACAGGACTGGACTGCGCATCTTTGTGCTGTTGTCAGATTCATGTGTGTATAGAGAGGGAGAACGTGGAAAACAGATGAGATAATAAGCGATGGCATTATTTGGTTCAATTTCAACCATATTTAATACTATATGATAtgatacaatataaaaaaaggtttcatAATGTAGTGCACACCTTTGGAAAACtatatattgtgtatgtgtgtatataaatatatacacatattttgaaagatttgttttaatttgccttATATGGTGGTTCTATTGCCTGAATTGTCCAGGGGGGGtattcatataattatatatataacttttaatCTGTGGACGTCAGCTGGGGGTCATTTGTAACACGCAGCCTCAGCATAAATGCGTTGTGAGCCAAGGGTGACAATATAGCAAAGGATCAAAACGCAATTGGAAATCCTTCTCCTTTACCCGAGTCGTAGTCCTACTACAGTACCTCATCGTTGATTGTGCTTAGAGTTCATTTGAACTGTAATCAGTCGGTTAACCAGAACGCAAGCGATTGTTTAATACACACTAATCTGTATTGTCGGGGTGCTGTCGTAATTCGCAGCACTAACCTGGATGGATCCATGTGTGTCGGATACAGAGAGAGCTCTGAACACGATGCAGACTTTTGGAGCCGAGGAGAATGgctgaaatgttatgttttttaaagaggGAACCAAATCAGCAATGTTTCTATGTGTAAAAAGACATTATCGGTTTACATAAAGTAATCAGGGTGCATAAGaatattcttttttctttcttttgtattattgcttGATGTAAATCTAAACAGGAAAATGTGCTACAAATTCTCAATTAACAATGAGTATGTAACTTTGTTTTGGTGA

Function

GO: NA

KEGG:

id description
K21246 NRBF2; nuclear receptor-binding factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002874 True 2647 mRNA 0.51 4 5190120 5196693

Neighbor

gene id symbol gene type direction distance location
AMCG00002870 reep3 coding downstream 99718 5068445 ~ 5090402 (-)
AMCG00002869 NA coding downstream 129572 5054132 ~ 5060548 (-)
AMCG00002865 ide coding downstream 283918 4879277 ~ 4906202 (-)
AMCG00002860 NA coding downstream 342400 4837720 ~ 4847720 (-)
AMCG00002859 cpeb3,LOC106604870 coding downstream 364089 4798587 ~ 4826031 (-)
AMCG00002873 NA coding upstream 44067 5240760 ~ 5241506 (-)
AMCG00002875 NA coding upstream 66057 5262750 ~ 5276075 (-)
AMCG00002876 NA coding upstream 92987 5289680 ~ 5297202 (-)
AMCG00002879 arid5b,LOC106577140,LOC102237181,LOC102783177 coding upstream 108218 5304911 ~ 5315169 (-)
AMCG00002878 arid5b coding upstream 150750 5347443 ~ 5354987 (-)
G139039 NA non-coding downstream 605948 4583865 ~ 4584172 (-)
G139029 NA non-coding downstream 678813 4507504 ~ 4511307 (-)
G139028 NA non-coding downstream 693758 4496162 ~ 4496362 (-)
G139027 LOC106576780,LOC103360772 non-coding downstream 694702 4495028 ~ 4495418 (-)
G139026 NA non-coding downstream 713457 4476464 ~ 4476663 (-)
G139249 NA non-coding upstream 199646 5396339 ~ 5396559 (-)
G139496 NA non-coding upstream 961050 6157743 ~ 6158763 (-)
G139593 LOC100846954,LOC107575789 non-coding upstream 1285574 6482267 ~ 6510125 (-)
G139639 NA non-coding upstream 1804972 7001665 ~ 7073536 (-)
G139668 NA non-coding upstream 2022176 7218869 ~ 7219192 (-)
G138932 NA other downstream 1187316 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 1236796 3928761 ~ 3953324 (-)
G138741 NA other downstream 2470701 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 4264722 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 4368529 805760 ~ 821591 (-)
AMCG00002935 LOC106589936 other upstream 1865780 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 2152118 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 2734473 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 3288668 8485361 ~ 8494596 (-)
G140006 NA other upstream 3650339 8847032 ~ 8847840 (-)

Expression


Co-expression Network