AMCG00002884 (ccdc6)



Basic Information


Item Value
gene id AMCG00002884
gene name ccdc6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5619227 ~ 5638109 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00002884
AGTTTTAATGCTAAGCAAGAGGGGTCGCGCCGGTCCAGGTTTCTCCCCCCTCTCCGCCCAGTTTGAAGCGCTGCTGCCCCTTCCTTGCACACACACTCGCTCGGCGAACATGGCGGACAGCGCAAGCGAGAGCGACACCGACGGAGCGGGCAGCAGTGTGGCCGCCCCGCcgacctcctcctcctcgtcgtcGGCGGCCTCCTCGGCCAGCAAGCCGGGCATCGTCATCTCCCCGTTCCGCCTGGAGGAGCTGACGAACCGGCTGGCCTCGCTGCAGCAGGAGAACAAGGTGCTGAAGATCGAGCTGGAGACGTACAAGCTGAAGTGCAAGGCGCTGCAGGAGGAGAACCGGGATCTGCGCAAAGCCAGCGTCACCATTCAAGCCAGGGCAGAACAAGAAGAGGAGTTCATCAGCAACACCTTGTTCAAGAAAATCCAGGCGctgcagaaagaaaaggaaaccctCGCTGTCAACTATgagaaagaagaagaatttCTTACGAACGAACTCTCCCGAAAACTTATGCAATTACAACATGAGAAAGCCGAACTCGAACAGCATTTAGAGCAGGAACAGGAGTTCCAAGTGAAcaaattaatgaagaaaataaaaaaactggaGAATGACACTATCTCGAAACAGCTGACTCTGGAGCAGCTACGACGTGAAAAGATTGACCTTGAAAACACATTAGAACAGGAACAGGAAGCACTAGTCAATCGCCTCTGGAAACGGATGGACAAGCTGGAAGCAGAGAAAAGAATCCTGCAGGAGAAACTAGATCAGCCCGTGTCGGCCCCCCCGTCACCCAGAGACATATCCATGGAGATTGACTCACCCGAGAACATGATGCGACACATCAGGTTTTTGAAAAATGAAGTGGAAAGGCTAAAGAAACAACTCCGAACGGCTCAATTACAACacaCTGAAAAAATGGCCCAGTACATAGAGGAGGAACGGCACATGCGAGAGGAGAACATCCGTCTGCAGAGgaagctgcagagagagatggagcgCAGAGAGGCCCTCTGTCGACAGCTTTCCGAGAGCGAGTCCAGCCTGGAAATGGATGATGAAAGgtattttaatgagatgtctGCACAAGGACTTCGTCCCCGCACAGTGTCAAGTCCAATACCTTATACACCATCTCCGAGTTCAAGTAGGCCAATCTCACCAGGTCTATCATATGCAAGTCACACTGTGGGATTCACACCACCGGCATCACTCACACGGGCTGGAATATCCTACTACAACACCCCGGGCCTTCACGTCCATGTGGGTTCTTCACACGGTATTGCGAGACCTTCTCCAAGAAGAAGCAACAGTCCTGATAAATTTAAACGTCCGACACCCCCCCCTTCTCCCAACACGCAGTCCGGAGTGCAGCCTGCGccgcccccacccccgccaGTGCAGCCCATGGTCCAGTCCCCATCGTCCCAGGCAGCTCCTTCCCAGCATTCAGTGCATCCCTCCTCACAGCCATAGTGCATGTGCTCTGCCACAGCTGCGACACGAGTGGACTTGACAGAGCAGGTCATTAAAAGCCAAAGGCTTAACCGACATATTTGGATTTGACTTCCTTGCACTGAGATTATATAGGCTTCACTGTTAACtgtgttgtaaatgtttgtttagaaTGCAGCCAGTGTTGTGGCACTACGACACTAATCCTAACAGCGTATTCTTGTCAGTGCTTACTGGAACTACAGATCTTTTGGATCTGAAACGTTTGCCACTCAATCTGTGAAAATACTGCATTGTTAAATGTCATGATGCTCAACTCCAATGGCTTTGatgcttcatttaaaaaagggaaaccTGTTATTTCTTTTCCAGTACAGAGTCAGCAGACATCGGAAGATATAATTAACCTGCAGAATGCCTCTATTTATTACGGATTTTCCAAGCACTATAGAATCAGcactacatttcaaatgtatattggTAACTGGTACAAAAGCCACTGAAAACTATCAGTGCCCGTGTGATCATTAAATTGTACGATTTTggttcccccccccctcttcaggattttatttttgtattagtgcTTGTGACATCCTGATGGCTTATCCTTGTcgaaaaagaaatataaaaaaatatatatatatttaagacatTGAATTGAAAGGTACAGTAGACAAACAGACAATATATGTAGTTAAGAGGCATATATAatggggactttttttttttttgatggttTGGGGGACTGTTGTgacataatttatataaaccTGTACAAATTGCATATTGTTAGTTAAAAATCAACAATCTTTAGGTTTTGCAAAATTATATTCTGAGCACAGATTAGAGTGCTTTTGTTGGCTTTGTATAGTGAAAATATAACTGCTTCTGAAGGCAGGGAGGTTGTGCTGTCGGTTTTAACTGGTGCTTTACACTCGACAAAGTGaagccatttagaaatattgAGGAGACGTGTGCATAATCTTGTTTACGATTTAAAAATATACGTGACCGCATCACAGCAAAATCATTGGAAACTCTTGGAAGGCTGAGCTTAGAAGTACATCAGAAGGCTTCAAAAGTACCTTGGTggtgtttaaatgcatcatttCTATTCGTTGATCTAATAAATTGGTTGGATATACTTTGCAGTGGAATAGATAGTGTCTTTTTGATGAGGAAAAAGCTGTATGGTATACTTGTTGGTAGAGCTTCACAAGGACGTTTATCTGCCTGTCAGAATTGTAGTCCACTTTGCGGACATATATTCTGATACACAGATGTCTTCTTTGGATCTGAATTCCATTACAGACTTTAGGATTATTCAGAAGCTCATTTTAAGCGAACGTTGGTGTAATTCAGTATTTGTGATACATGACCTTTTGGTCACTGATGTGAGCTACTACTTATTACTTTATGGTTCTTGCTATGAAATTCACATCACAGGTATTCCATATGCGGTGTCCGTGTCAGTGCTACCACTGTGATTTTTTTGCAGAGTACATTATAGAATAGCTGCATATATTAACTTAAAAGATTTACCATACTGCTAAATGAATGACTTGCAATTAAGGGCATGTGGGACCGTGCTACATTAGAGCAAGtatagttaaacaaaaaagctttGCCGAACTTGTGAAAGtctatttcatttttgaaagtGGTTGAACTGTCCAATATAATGAGTATTGATTGTGAATTACCAGTCTTAATCTTTTTCACCTTCAATTCGGGTCAGGCTGAATCCAGTTTTGTCTGTGGTCTGTTCGCTCTGCCACAGATGCATTGCTAGGCTGTGAGAACAAACCCTCTCATCTTTTATATTGGTGCTTCATTTTCAGGCTCtgaacaatgttattttacagtCTTGAAAGCACCAACAGTAGTGTTTCATGCCTTTCAATCTGAATTCACTAGTGATTCAGCTGTCCTTTTCATGGTGGCAATACTTCATCCTTCAGCAACTGCAATCGAACCTTTTGAGGAGTAATTAAAGATTCTTGCTTGTTCAATTTACAAGGCCTTCTGGTCTCTTACACAGGAAATATTAAGGCAGAAACTCAGtgtcacataaaaaataatgcataaagCGCTTATTTGTGAAGATGTCAAACTGACACTTACATATTTGAAGCCCAAAAACCTTCAAAAGTTTGAGGGGAGAAATGTCTGTGGTCAAGttagaacagtttttttttttttaaatgcagatgttGACAGAATAATCATTACACATGTATCTATGTTTAAAAGACATAACTAAGTATCAGGtgaggtgatttttttttttttaattatccaaCTAAACTGCTTTTATGATGGGGttcaaatagaaaatgtatagaaaGTTTTTTGGTAATGCTAAGACTAAGAACACCCTATTGGTTTAGCACTAGAGCAAACTATTCTGAGTAAATATTTCACTAAACATCTTAAAgagtttgtgtgtattttaatttgatatgcTTTAGTGGAGGGTGTCAGTTAACAAATGACTGGTTTCAGATTTCCGGTTTTAAAATATCGGCATCTATTAgaattgattttactttttttggggggggttaaGTTGTAAATATAATGCATCATTTCCGTTGTGagagaacctttttttttttttttctctttttttttctttcatattcgTTTACCGCACACAGGGAGATTCTGTGGTGTtcacatacatttcaaactttTGCAAGTCCAGatacaactttttattttctgttaatttttggtttgctttgtttgggGTGGTTTTTGCTATTTCTTTAACAGACTATTGACAAATGAATGTAAAGTTTGTTCGTGTTTAACTGCAATCATAAATGGATGGAACACCTCCGAGCCTTAATTCACTGTGGTATGGCTAAATGTAAGCATTATCTAGCTTTTCCCCACATCTAATAATTAAAGCCTTAATATGCGTTATGAGAGCGA

Function


symbol description
ccdc6 Enables identical protein binding activity. Predicted to be involved in cytoskeleton organization. Located in cytosol.

NR:

description
PREDICTED: coiled-coil domain-containing protein 6

GO: NA

KEGG:

id description
K09288 CCDC6, PTC; coiled-coil domain-containing protein 6

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00002884 True 4414 mRNA 0.42 9 5619227 5638109

Neighbor


gene id symbol gene type direction distance location
AMCG00002888 ank3,LOC107746453,LOC102308332 coding upstream 2422 5537490 ~ 5616805 (+)
AMCG00002880 rhobtb1,LOC107654062,LOC106604002 coding upstream 183313 5418675 ~ 5435914 (+)
AMCG00002882 NA coding upstream 232798 5383852 ~ 5386429 (+)
AMCG00002881 NA coding upstream 235534 5380613 ~ 5383693 (+)
AMCG00002872 NA coding upstream 334155 5276915 ~ 5285072 (+)
AMCG00002885 NA coding downstream 5266 5643375 ~ 5651423 (+)
AMCG00002889 NA coding downstream 15693 5653802 ~ 5655220 (+)
AMCG00002886 NA coding downstream 20328 5658437 ~ 5665972 (+)
AMCG00002887 NA coding downstream 29483 5667592 ~ 5669416 (+)
AMCG00002892 NA coding downstream 38061 5676170 ~ 5689692 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding upstream 176948 5439777 ~ 5442279 (+)
G139238 NA non-coding upstream 252544 5366435 ~ 5366683 (+)
G139205 NA non-coding upstream 379737 5239350 ~ 5239490 (+)
G139170 NA non-coding upstream 550332 5067472 ~ 5068895 (+)
G139084 cpeb3 non-coding upstream 816983 4798613 ~ 4802244 (+)
G139351 NA non-coding downstream 179943 5818052 ~ 5819125 (+)
G139488 NA non-coding downstream 500012 6138121 ~ 6140671 (+)
G139498 NA non-coding downstream 556502 6194611 ~ 6197030 (+)
G139504 NA non-coding downstream 560161 6198270 ~ 6198502 (+)
G139505 NA non-coding downstream 561250 6199359 ~ 6199856 (+)
G139176 NA other upstream 520483 5096731 ~ 5098744 (+)
G138941 NA other upstream 1589303 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 2023119 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 2503146 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 3124633 2492086 ~ 2494594 (+)
G139492 NA other downstream 509639 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 1428746 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 1738578 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 2271143 7909252 ~ 7920908 (+)
G139784 NA other downstream 2285073 7923182 ~ 7926832 (+)

Expression



Co-expression Network