AMCG00002889


Basic Information

Item Value
gene id AMCG00002889
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5653802 ~ 5655220 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002889
TCTGCGAGGAGTGCCAGGCCCTCTGGACGATGCTGGGCTCAGAGCACAGGGCTCGGCACACTCTGCCCCCGGGCCTGAGCGTGCAGGAGTCAGGCATCCCTGGCGTGGGCCTGGGGGTGTTCGACCAGGGCCCCCTCATCCCCAGAGGGGTGCACTACAGGCCCTACAAGGGGCAGCTGGCCAGCAAGGAGGAGGCCATGGCCAGTGGTGGTGAgttTGTGAACTGTACGCAGAATGAGGAAGAGCAGAACCTGATGGCCTTTCAGTACCGCGGGCAGGTGTATTATAAGTGCTTCCAGCCTACCGGCCCGGGCTGCGAGCTGCTGGTTTGGTACGGGGAGGAGTACACCAGGGAGCTGGGCATCACCTGGGACTACCTGTGGGACAAGAAGAGCAGAGCCTCAGCATATGAAGAGGTGTCACCCTCAGGAGTACCTCACCCTGCTGAGGTCAGGCTCAATCAGAGCAGAGAGCCTCCTGCCCACCCACTGCCCACTCATCTGCCCCGCCCCCTACACcactgcacccag

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002889 True 530 mRNA 0.63 4 5653802 5655220

Neighbor

gene id symbol gene type direction distance location
AMCG00002885 NA coding upstream 2379 5643375 ~ 5651423 (+)
AMCG00002884 ccdc6 coding upstream 15693 5619227 ~ 5638109 (+)
AMCG00002888 ank3,LOC107746453,LOC102308332 coding upstream 36997 5537490 ~ 5616805 (+)
AMCG00002880 rhobtb1,LOC107654062,LOC106604002 coding upstream 217888 5418675 ~ 5435914 (+)
AMCG00002882 NA coding upstream 267373 5383852 ~ 5386429 (+)
AMCG00002886 NA coding downstream 3217 5658437 ~ 5665972 (+)
AMCG00002887 NA coding downstream 12372 5667592 ~ 5669416 (+)
AMCG00002892 NA coding downstream 20950 5676170 ~ 5689692 (+)
AMCG00002891 lgi1,lgi3,LOC104930305,LOC103387209,LOC106536097 coding downstream 60192 5715412 ~ 5730295 (+)
AMCG00002896 NA coding downstream 124524 5779744 ~ 5817686 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding upstream 211523 5439777 ~ 5442279 (+)
G139238 NA non-coding upstream 287119 5366435 ~ 5366683 (+)
G139205 NA non-coding upstream 414312 5239350 ~ 5239490 (+)
G139170 NA non-coding upstream 584907 5067472 ~ 5068895 (+)
G139084 cpeb3 non-coding upstream 851558 4798613 ~ 4802244 (+)
G139351 NA non-coding downstream 162832 5818052 ~ 5819125 (+)
G139488 NA non-coding downstream 482901 6138121 ~ 6140671 (+)
G139498 NA non-coding downstream 539391 6194611 ~ 6197030 (+)
G139504 NA non-coding downstream 543050 6198270 ~ 6198502 (+)
G139505 NA non-coding downstream 544139 6199359 ~ 6199856 (+)
G139176 NA other upstream 555058 5096731 ~ 5098744 (+)
G138941 NA other upstream 1623878 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 2057694 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 2537721 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 3159208 2492086 ~ 2494594 (+)
G139492 NA other downstream 492528 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 1411635 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 1721467 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 2254032 7909252 ~ 7920908 (+)
G139784 NA other downstream 2267962 7923182 ~ 7926832 (+)

Expression


Co-expression Network