AMCG00002892


Basic Information

Item Value
gene id AMCG00002892
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5676170 ~ 5689692 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002892
atgggTGAACTAAACAAAGAAGCGGTTGAGAAGTACTTGGAGAATAACCCCCAAGTTGCCAAGGAGTACTTTGATAAGAAGCTTCGAGCAGAGGTACTGGGGGCAGCTTTTACGGATTCCAAATTGGATATCAAGGAAGCGGCTTCGATGAAGGAAATTACCCAAATATATGAATCgtcatttatatttgaaatgatcaaAGAATTACAGAATCTAACGAGTGTGGAAAATACTGTACACAAGGTCCTGCAGAGAATAGCAGCGCTGGTGAGAGCTGACAAGTGCAGCTTGTTCATGTGCAGGTCTAGAAACGGCATTCCTGAGCTGTCCACTACCCTCTTCAATGTCACGGAAAACTCCAAGTTTGAGGAAAATATTGTGGCTCCTGACTCTGAGATTGTTTTCCCTTTGGATGTGGGCATAGTTGGGTGGGCGGCTCACACAAAGAAGACATTCAATATACCGGATGTTAGAAAGAATAACCATTTCAGTGACTTTGTGGACAAGCAGACAGGATACACCACGAAAAGCATGCTGGCCAGTCCGATAATGAATGGAAAGGAACCAATGGCTGTCATAAtggcaataaacaaaaaagacgCCCCTGAATTCTCAAAAGCAGATGAAGAGCTCTTCATCAAGTACCTTAACTTTGTGAACATAATTTTACTACAAAATTACACTGCATATCTTTACAATGTGGAATCCAGGAGAAGTCAgGTACTGCTGTGGTCTGCTAGCAAAGTGTTTGAAGAACTTACAGATATTGAGCGTCAGTTTCACAAAGCTTTATATACTGTGAGAATATATCTTAACTGTGAAAGATACTCGGTTGGTCTGCTGGACATGACCAAAGAAAAGGAATTCTACGATGAATGGCCAGTCAAACTTGGAGATGCCGAACCATACAAGGGTCCAAAGACACCAGATGGAAGAGAAGTTGTCTTCTATAAGCTCattgattatattttgcatggCACTGAAGAAATCAAAGTCATACCGGCACCCACCCCAGATCACTGGTGCCTTGTTAGTGGATTACCAACTTATGTGGCTGAAAATGGATTTATTTGTAACATGATGAATGCACCAGCAGACGACTACTTCACATTCCAGAAAGAGGCTTTTGATGAGACGGGCTGGAAGGTTAAAAATGTCTTGTCACTGCCTATTGTCAACAAAAAGGAAGAGATTGTGGGAGTTGCCACATTTTACAACAGAAAAGATGGAAAGCCATTTGACGAGTATGATGAGCAGATTACTGAAgcCCTCACACAGTTTTTGGGTTGGTCTGTACTGAACACGGACACCTACGACAAAATGAACAAGTTGGAAAACAGAAAGGACATTGCACAGGAAATGCTCATGTACCAAAGCAAATGTACTAATAATGAGCTGCAGTCAATTCTGGTGAGTTACACTAAAGAGCACAGGCCACAATTGTGTAGTGCAAGACAGAAACCGACTCTTACTTTCTGTGTCCGCTTCCAGAACACCAAAGAGAAATTCAAAAAAGAGCCAGAAGATTGTGATGCAAAGGAACTGGTCAAGCTGTTGGTTCTAACCCGATGGATGTACACAGTGAGGAAAGGTTATCGAGACATTACCTATCACAATTGGCGGCATGGTTTCAACGTTGGCCAGACCATGTTCACTCTGCTGATGAGCCTCAATATCTTCCAGAACCTTCAAAAGCGCCAGTTTGAAACTGTTATCCATTTATTTGAAGTCGCCATCATTGCAACAGACTTGGCTTTGTACTTCAAAAAAAGAACAATGTTTCAGAAAATTGTTGATGCCACTgagaaaatggaaaaggaagAGGATCAAATCAATCATATCTCCAATAATCCAACCCGGAAGGAAATCGTCATCTTTTCCTTTTCCAACAACAAAACCACCCAAAACAGGGCAATGATGATGACTGGATGTGATTTATCTGCCATTACCAAGCCCTGGGAAGTCCAGAGTAAGGTGGCCCTAATGGTAGCCAATGAATTTTGGGAACAGGGAGATTTGGAAAGGACCGTTCTCGAGCAGCAACCCATTCCTATGATGGACAGAAACAAGGCTGAAGAATTGCCTAAGCTGCAAGTTGGCTTTATCGATTTTGTATGTACTTTTGTATACAAGGAATTTGCGAGGTTCCACAAAGAAATCACACCCATGTTCGATGGCCTGCAAAACAACCGAGTGCATTGGAAGGCCCTGGCAGATGTGCACGAAGAGAAGGTGAAGGCCATCgaagaggagaagaagaagcagGAAGAGGCAGCCAAAAAAGGTTACTAA

Function

GO:

id name namespace
GO:0045494 photoreceptor cell maintenance biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002892 True 2292 mRNA 0.42 17 5676170 5689692

Neighbor

gene id symbol gene type direction distance location
AMCG00002887 NA coding upstream 6754 5667592 ~ 5669416 (+)
AMCG00002886 NA coding upstream 10198 5658437 ~ 5665972 (+)
AMCG00002889 NA coding upstream 20950 5653802 ~ 5655220 (+)
AMCG00002885 NA coding upstream 24747 5643375 ~ 5651423 (+)
AMCG00002884 ccdc6 coding upstream 38061 5619227 ~ 5638109 (+)
AMCG00002891 lgi1,lgi3,LOC104930305,LOC103387209,LOC106536097 coding downstream 25720 5715412 ~ 5730295 (+)
AMCG00002896 NA coding downstream 90052 5779744 ~ 5817686 (+)
AMCG00002895 LOC106577152 coding downstream 160836 5850528 ~ 5851871 (+)
AMCG00002897 NA coding downstream 168582 5858274 ~ 5879024 (+)
AMCG00002900 NA coding downstream 219285 5908977 ~ 5913523 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding upstream 233891 5439777 ~ 5442279 (+)
G139238 NA non-coding upstream 309487 5366435 ~ 5366683 (+)
G139205 NA non-coding upstream 436680 5239350 ~ 5239490 (+)
G139170 NA non-coding upstream 607275 5067472 ~ 5068895 (+)
G139084 cpeb3 non-coding upstream 873926 4798613 ~ 4802244 (+)
G139351 NA non-coding downstream 128360 5818052 ~ 5819125 (+)
G139488 NA non-coding downstream 448429 6138121 ~ 6140671 (+)
G139498 NA non-coding downstream 504919 6194611 ~ 6197030 (+)
G139504 NA non-coding downstream 508578 6198270 ~ 6198502 (+)
G139505 NA non-coding downstream 509667 6199359 ~ 6199856 (+)
G139176 NA other upstream 577426 5096731 ~ 5098744 (+)
G138941 NA other upstream 1646246 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 2080062 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 2560089 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 3181576 2492086 ~ 2494594 (+)
G139492 NA other downstream 458056 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 1377163 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 1686995 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 2219560 7909252 ~ 7920908 (+)
G139784 NA other downstream 2233490 7923182 ~ 7926832 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_03115498_03127047 PDE6C coding CI01000047 null 3115187 ~ 3128105 (-)