AMCG00002900


Basic Information

Item Value
gene id AMCG00002900
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5908977 ~ 5913523 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002900
GCGGCGCAGAGAGTACGGGGCGGGTCGCCTCAGATAACCCCGGGCTGccagcttttattatttttaatgtattgaatatCAAAATTATCAAAACTAAAAACGACATCCATTGACCCGGCTTGAAACAATTAATGTGCCTGGGGGGTTGGTTTTTCTTTACTCTTTTCGATGAATTGCACCAGGGTCCTTCACATCTTGAACCCTAGACCATTACCGGGCCCTATCATGCCAGTAGATGTAGCCATGAGACTCTGCCTGGCACATTCACCCCCCCTGAGGAGTTTCCTCAGCTCTTATGAGGACTGCAGGGGGAGAAACCTGGTGAACAGGTACAAACCACTGAGACCGTGCATCAGCTCAAAACAAGAGGAAGAGGCAGCGAGCGTGCAATGGCAAAAACCCAAGACCAAATCGAAGAAGAGGGTGGTGTTTGCTGATTCTAAGGGCCTGTCCCTCACAGCCATACACGTGTTTTCGGAGTTTGAGGAGGATCATATTTCAGAGCTGCAGTTCGATCTCACTGACCTGGAAGATGCCACAGGGGGTTTGAAAGTCAGTAAGGACAGAAACTTGGTCCTGGACTTCTGCCAACCTGCTGCCGATTACTTGGATTTCAGAAATCGTCTCAAAAAGAATTTCGTGTGTCTGGAAAATTGCTCCCTCCAGGAAAGGTTGCTTGCCGGcacagtgaaagtgaaaaacacaaGCTTTGAGAAATCTGTCCAGATACGCATCACTTTCGACACGTGGAAAAGTTACACGGACGTCGAATGCGTCTTTATGAACAATGTTTACGGTTGCTCAGAAACCGATACCTTTTCTTTTGTCATTGACCTGCCAGATTTTGTGCCCCCTCATGAGCGAGTTGaattctgcatttctttcaaaacCCAAGATCAGACCTTTTGGGACAATAATGACGAGAAGAACTACAGACTAGTGCACACCGAGTTGAAATGTCATGGTGTTCAGGTCCCACCTATTCTCCAGAATAAAACGTCAGAATATAAAACCCCCAACAAGCCTCAGGAGATGGAGTTTGATCAATTCGGTAGTCCTAGGACGTCAAGTGGACTCTTCCCCGAATGGCAGAGCTGGGGCCAGGTTGAGAACACCGCCCCCTATTGGTGACTGCATGCTTCATGTTAGACAAATGCACAGGAGTCGTTTTCCAGAAGTCTTTGCAAGTGCTTGGAAAGACGAGAAACAAAGTCACTTTAGGAAGCCTGAAGCCTAATGGTTTATACTCTACATGGTTCCCGAGTACAGCAAGTacagctttttgtgttttaaacgGAAATGCTAGAACATAGAAAACATTGATCTTCTTTTTTTGCCTCTTCAACCGATATAAAGAAGACTCTGCTTTCAGTGTTGTGGGCTTTAGGACACAAGTGCTATTGAAACGTTTTTTTGCTAATCCAAAAATGGAGAGGTCCAAGTGCGAGTGTATCATATGTATAATTTGGGGCATGGGTTATGCTCAAGTTCTTATTACAGTACCTCAGCATTGCCTTCTTTCACTTTCTGTAGTGATAACCTAACCTAGCTATATCCCAAATCACTTTCAATAAGTAGCAAGTGTGTACCATTTAAGCAGTGTGCATAAACCTTTTATAGAATACTCTAGCGAATCACTTTGAAAGACGCAGGCAGAGTAACAAAATACGTACAAATCACTAGTTGAGACACTGATGAGTTGTAGCAGGTCTAAGACATGCTGTAAGGAAATTcagaaactgtattaaaaatagtCTAGTTTTGAATTATCAAATCAGAAATATTTGTTACATTCAAAGCATGATATtgagtattgtttttattaatctgaTGTCTTTCTCAAAGCAATTGAAGCTAATTTTGATTTGTCTATTTGACAAAAATACTCATCAAATAATCATGCTGTTCATGGCCtcataatatttgaaaatgaattaaaacaaatagtttagtatttggtattttacagttcaaactgaaatatatacCAGAccttgcaattaaaaaaataaatattgtgaatgTTGTTGTCTACTTAAACTTTAAGTTTGGTTCCTTGTATTAAAATCGTATTTTACCAGTTAGACAGCTTAAGATGGATTGGTTTGATTTCATGTACTATAAACAAAAGCTTGCAACCCCGAAAAACAAAGTATTACGttaaagaaatgtacatttatactGATCATATATTGACATTTAGAAAGACATTAGTAAGGACAGAAGAAGATGATTCAGTTGAACTTGAagttcaaacacattttcttacCCAGAAAAGTGCCTTTTGTTTGAATCGGATGCCACCATGTGAAGCATTTGTCTCATCTCCCATCATTACATCTGAATCAAGATTAAATATGCACCAGTTCattggaattatttatttatgatcaCAGCAATAATTGCCACCAATTGTTGTTTGGTCTGTTTAATGTAAGCCACCTGAATGTTGTTGTGCTGTAAAAGATTCAGTGGTGAGCAGTTTGCACTGATGGAAACGAAGCCTTTTAAATCTGTGAATGTGAGTGTTTAAACTGGTACAGATACAAAGTCCTTCATATTGAAGATGTTTAATTGTGGTACCTTCTAATTAATTACTTTCAGGAAAGAAATTGGTTGTCCTAATTTCCCAATAgagtaaatatttacatgtaagAAATGCATCTTCCCTTTTTGCACATAAATGTTTGCCTGCATTTCTAATCactttttgaatatttataattacagaAGCAAGTAATACACTTCACCAGGTTATTCTCTACACAGTATTTGCTGCTATGTTTTTGTATATGCTGGTTGTCTTGCATTTATTAATCCAGTGCTATTAGAGAATATTGTTGTGTGTGAAACTGAGGAGTGATGTGCAGAATGAGATGGCATGTTATGTAAGGGTTGTATGAGTAAGTAAATAAGAGTGTGTAGGTGAAAGAGTCTAAGAGGAAATGTGTCATAGTGGACCTGCTATCCTTTCCCTTTTTAAGAAATGGAGGTCATTGTGAGTCAGATATCTCTAAAGTCTGTTTGAAAAGGTATGCTATccgatttgttttttttccagaagtGCAATGTGGAGGTGAATGTTAAGGGGTGATGCACAAAGCCTGTATCTGACAcccagatatttttttttactgtaaatacatgtttcttgTGTGCCAGaacttttctctcttctttgtccctttaataaataattttttatattgtCAA

Function

GO:

id name namespace
GO:0005977 glycogen metabolic process biological_process

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002900 True 3213 mRNA 0.39 2 5908977 5913523

Neighbor

gene id symbol gene type direction distance location
AMCG00002897 NA coding upstream 29953 5858274 ~ 5879024 (+)
AMCG00002895 LOC106577152 coding upstream 57106 5850528 ~ 5851871 (+)
AMCG00002896 NA coding upstream 91291 5779744 ~ 5817686 (+)
AMCG00002891 lgi1,lgi3,LOC104930305,LOC103387209,LOC106536097 coding upstream 178682 5715412 ~ 5730295 (+)
AMCG00002892 NA coding upstream 219285 5676170 ~ 5689692 (+)
AMCG00002903 NA coding downstream 98305 6011828 ~ 6016245 (+)
AMCG00002904 NA coding downstream 106735 6020258 ~ 6038908 (+)
AMCG00002911 NA coding downstream 173037 6086560 ~ 6092066 (+)
AMCG00002908 LOC107553481,LOC107753437,LOC107669213,LOC107683711,LOC108413682,LOC107715956,LOC105902286 coding downstream 180582 6094105 ~ 6110512 (+)
AMCG00002910 NA coding downstream 204206 6117729 ~ 6132219 (+)
G139351 NA non-coding upstream 89852 5818052 ~ 5819125 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding upstream 466698 5439777 ~ 5442279 (+)
G139238 NA non-coding upstream 542294 5366435 ~ 5366683 (+)
G139205 NA non-coding upstream 669487 5239350 ~ 5239490 (+)
G139170 NA non-coding upstream 840082 5067472 ~ 5068895 (+)
G139488 NA non-coding downstream 224598 6138121 ~ 6140671 (+)
G139498 NA non-coding downstream 281088 6194611 ~ 6197030 (+)
G139504 NA non-coding downstream 284747 6198270 ~ 6198502 (+)
G139505 NA non-coding downstream 285836 6199359 ~ 6199856 (+)
G139506 stambpl1,LOC107594159,LOC107758441,LOC107683716 non-coding downstream 287680 6201203 ~ 6201470 (+)
G139176 NA other upstream 810233 5096731 ~ 5098744 (+)
G138941 NA other upstream 1879053 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 2312869 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 2792896 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 3414383 2492086 ~ 2494594 (+)
G139492 NA other downstream 234225 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 1153332 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 1463164 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 1995729 7909252 ~ 7920908 (+)
G139784 NA other downstream 2009659 7923182 ~ 7926832 (+)

Expression


Co-expression Network