AMCG00002901


Basic Information

Item Value
gene id AMCG00002901
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5936812 ~ 5955103 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002901
GGTTTGGACAGAGGAACAAAGCCACATTTTCCCACCTTCAACAGTTTTATCTCAACGATAAACCAGAAGAAAGACGTTGTGGGCAGCCGGCATCTATCCACGCAACTTCTCATGCCCAATGGAAAACATGtGAGAGAGCTGCCTCCTCTCTGCTCGGATGTCCGACAGAAGCATCGCATCTCCATAGAGACGCTTCCTCCGGAGATGAAGGCCCCggaAGACCTTGAAAAGGCAACCATTTCAGGCAACTGGAAAGTTGTCCATGATTTCTTCTTGACTACATTTGACTCTTTTTTGGAACTGAATGCTGCTTTTAAGaaaGACGCAAATGCACCCTTTAACACAATTGAAGATGTGGGAGTTAATACAAGATTTGTTAATGCTGTTTACGATGCCTTACTCTATACACCCCAAGACATACAAAAATCAGTGCTGAAGGGAATAATTAACAGCTTATTGAGAGAATGGAAAGGGCCCCGAACCAAAGATGACCTTCGAGCTTACTTCATACTTCTTCAGAATCCGCAGTACAGCAGCACGTCCACGTATGTCATATACGCACACTTGTTGAGACAGATAGCAGCTTTGGCGGAGGCAGACCATCATTTCCTTGTTCACTGGTTTAAAAAGCTGTCGCAGAGGAGGTTTAAACAGCTGGTGGACAGACTTCTCCAGTTTATCTCCCTGCGCCTCTTCCCCACAAAGCCCGACGATGTCCCGCCCCTGGCCAAATGTACCTGGTGGATTCCTTCAGCAACCAAAGTCCTCTCTCTACTCAATGCAGCAAACAGCATTTCTAATCCACCAATTTTGCCTTTCACGGATTTCTATAATTTAACGCTGGACCATATTGACATTATGGAAGAATATCAGACGTGGCAGTGTTATGGGAATTCACACAGGTTCTCGTTCTGCCAGTTCCCGTTCATTCTCTCGATCGCAGCGAAGAAATTGATCATCCAAAGAGACTCAGAGCAGCAGATGATTAACATTGCCAGGCAAAGTCTCGTGGACAAAGTCTCTCGCAGGCAGAGAGTCGACATGAACCTGCTGTTTCTCAACATCAAAGTGAGACGACCCCAGCTGGTCAGCGACTCCCTGGATGAGCTGACGAGGAAGAGAGCTGATTTAAAGAAGAAACTGAAAGTCACCTTTGTCGGAGAAGCGGGTTTGGACATGGGCGGCTTGACGAAGGACATCACCCTGGATATTCGGTTTCCACCTTGCTGCTATAAGAAGTTGCTGAGTCCGCCCATCGTGCCCTGTGACCACGACACCCCAGTGGGCATGGCTCCTCTGACTCTGGCTGACCTGGACCAGATAATGCCAGAGCTTGCTCATGGGCTTGGTGAACTGTTAGCTTATGAAGGCAACGTAGAAGAGGACTTCTATTTGACTTTTCAGGAAGAACTGGGGGTTTTAAAATCATACAGCCTCAAACCAGGTGGAGACAGAATTCCTGTTACAAACCACAACAGAAAAGAATATGTCCAGCTGTATATCGATTTCCTTCTCAACAAGTCCATCTACAAACAGTTTGCCGAGTTCTATTATGGATTCCATAGTGTTTGTGCTTCAAATGCTCTGATGTTACTGAGACCCGAGGAGGTGGAGATCCTGGTCTGTGGCAGTCCAGACCTAGACTTGAATGCCTTACAGAGAGTCACCCAGTATGAGGGCTACAGCAAAACAGACCCAACGATTCGGTGTTTCTGGGATGTGGCTTTGGGATTTCCCTTGGAGTTACAGAAGAAGTTGCTACATTTTGCCACGGGAAGCGACCGAGTGCCAGTTGGTGGGATGCTTGATCTGAATTTTAAAATCGCTAAGAATGATGTCTCCACTGATTGGTTACCAATATCTCACACCTGCTTTAACCAGATTTGTCTGCCTCCCTACAAAACCAAGAAGGAGGTGAAACAGAAATTGACTATTGCTATTTCAAATGCGGAAGGATTTGATGAGAGGTAGCCAATGAAAATGCAGATCACAAAGTGTCCTGACGCATCATCCACACCACTGCCCAATGGGAAAGGAGGTGCCATGTTGGAATATTCTGGCATCGGCCCGCCTCCATCGTACGGTTTGCAACTTCCAGACTAAAGAGATGATTTgctcaaaatgttttaaattgtcccTAATAATGTTATGAAGTGCAAAAGTGGCACAGGATCGGTAAACCAACAGGAAAAGAGATACGTGATTTCTCTTGAAGTATATGAGGTACTTTCACTTTTTCTTAAATGGCCACTTGACTTCGATgtctctctatccctctgtATCAATCAGATCCATCACACAGCCTTATTCTCTATCTGCTTCATTGCAATCAAATCAAACACCTATCTGAgagaggatttatttttgtaacctttctttcTTCAATGTTTGAAGTAACTTAATAATGTTGTTAACAGACCAGTgagcatttgtgtttgtgaaaacaGATAATTAAATCTAGGTCAACACAGGCTTGTTTTTGTCGAAAGAAAAAATATGGGCCTGGTAGCCTGTCAGATTGGCTCTGAGATGAGAACAATTAAAAGGATAAGGTCCAGGATTCCTGAATAAAGAAATAGTGGGACCATTTGTGTTGCGACTGGTAGGAAGATGAGACAagaaatatatatctgtgtaagATGTTCTTTTGTTATGGTAGAGAGATTTGTATGATTGTTTGACTAGGAATTTTAGACAAACAGCTGTTTATGCTGagatttgtaacattttataaatgaaattatttaaaaacaatttaaattatataacacTTTCACTCTTTTGAGatgctatatttaaaattagaacAAATATTGGttgaaattttattttgaataagaaatgatgtcttatgttttgtatattttgttgcaAAGGCATAATTGAGCTGTATGTGATTTATCTGTAGAATcctgaattgaaaatgtaagttttcACACCTGCATTAAATTTAAGGGAAACAGCACTGCTTTCACACTGATCATGTCTTGTACATGCCtgtgtgcatacatacatacgtaggTGCTCCCTCTCTGTTGGATTTGAATGTGCTGAGTTGGATATGAATAATTTCAGTCCGGAAGTAAACAGTTTCTCCTGAGAGGTGAAATGTTGTTATATGAACCCAAACTGTTTTAATGTGCTGTCTTTAAAAAGTGCTGAACAAATTTGGAGTCATCATTTTTTAGAAGACAgtcttcagtgtgtgtgtgtgtgtgtgttagagacTGTATTGTATGGTTTTGCTTAATGTAGCCCTaccaaaacatgaatgaatTGGTAATACTTGCTACACAAATAGAAGAGATTGTGCTCAGTGAAATGCACCTTATACACGACtaaacagtcagtcagtcagtcttaTTTGATATGGAATAAAGCTCTAGCtataacaaaacacaaccatTTGGTGAGAGCAACAACCGACTGCAGCCCCCAGGTGGATAAAACAGTACATGTTGACATTTTCTATTtagtatgaaaacaaaaatgagggCCAGCCTCCTACTGATACAATTGTGAGGGCTGGTGCAAATCCAGCACTATCCTGTGTTAGCTAGAGTGGTGTAGCATtcgtatttatttttatgtgaaagttgtttatgtatttgtcctcaaatcattaaatattcaCTGTAAGACTCAGGAG

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K12232 HECTD2; E3 ubiquitin-protein ligase HECTD2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002901 True 3649 mRNA 0.42 20 5936812 5955103
Loading

Neighbor

gene id symbol gene type direction distance location
AMCG00002902 tnks2,LOC107654041,LOC108431390,LOC108274191 coding downstream 36594 5887057 ~ 5900218 (-)
AMCG00002898 tbc1d12 coding downstream 90165 5826792 ~ 5846647 (-)
AMCG00002899 NA coding downstream 110534 5810138 ~ 5826278 (-)
AMCG00002894 NA coding downstream 224724 5696209 ~ 5712088 (-)
AMCG00002893 NA coding downstream 264870 5670112 ~ 5671942 (-)
AMCG00002906 pcgf5,LOC108410714,LOC106589380,LOC107584148 coding upstream 19459 5974562 ~ 5998773 (-)
AMCG00002907 NA coding upstream 61233 6016336 ~ 6020142 (-)
AMCG00002905 LOC107584235,LOC100536080,LOC107758424,LOC107669182 coding upstream 128658 6083761 ~ 6086472 (-)
AMCG00002914 NA coding upstream 177731 6132834 ~ 6141012 (-)
AMCG00002913 NA coding upstream 187800 6142903 ~ 6144393 (-)
G139249 NA non-coding downstream 540253 5396339 ~ 5396559 (-)
G139039 NA non-coding downstream 1352640 4583865 ~ 4584172 (-)
G139029 NA non-coding downstream 1425505 4507504 ~ 4511307 (-)
G139028 NA non-coding downstream 1440450 4496162 ~ 4496362 (-)
G139027 LOC106576780,LOC103360772 non-coding downstream 1441394 4495028 ~ 4495418 (-)
G139496 NA non-coding upstream 202640 6157743 ~ 6158763 (-)
G139593 LOC100846954,LOC107575789 non-coding upstream 527164 6482267 ~ 6510125 (-)
G139639 NA non-coding upstream 1046562 7001665 ~ 7073536 (-)
G139668 NA non-coding upstream 1263766 7218869 ~ 7219192 (-)
G139752 NA non-coding upstream 1500441 7455544 ~ 7458491 (-)
G138932 NA other downstream 1934008 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 1983488 3928761 ~ 3953324 (-)
G138741 NA other downstream 3217393 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 5011414 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 5115221 805760 ~ 821591 (-)
AMCG00002935 LOC106589936 other upstream 1107370 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 1393708 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 1976063 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 2530258 8485361 ~ 8494596 (-)
G140006 NA other upstream 2891929 8847032 ~ 8847840 (-)

Expression

AMCG00002901 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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AMCG00002901 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00002901 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
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Co-expression Network