AMCG00002910


Basic Information

Item Value
gene id AMCG00002910
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6117729 ~ 6132219 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002910
TTTCTTAACAAGATAAAGCTTGCTTTACTGATCGTCAATAGCAAGGTTTCTTCCAGAGACAAACCTGCATATCTGCATTATTTAAGAGTTTGGCGTCTGGAGTACTGGTACCTAAGCCTATACACTTCATGTGCGCATTCTGGTGGATCTTTGTGCCGCTGAGATGGATAATTAAAAGGCGAATCCACATGCATGGGTCGCATCTACTTCAGAGCCAGGATTACTGCATGGGATCTGGGACCATGCGGGAGGAGACAGAAAGCCCAAAGTTTTGCTCTTAGGTATCTTTATAGAATGCAATGTACTTTCACTGGTTGTATTTTGAAGATGCAGAGCTTGCTTACTTGGGACATTTCAATGAATGTGCAGCATAACTCAACTAAGAAGCCCCCCATCGGATAACATTCCATGCATTCTGTGCAACAGGGAACACTGCCGCACTGAGCAAAGTATAGCTGGAGATCAGCACTAATAACTTGAAATGGAAAAAGGGATTAGGGGAGCGAGCTCTGTTACAACCATGGCCCAGACGAAAAAGGTGCCGGGAATCGCCCCTCCTGATGGAGGCTGGGGATGGATGATCGTTGCTGGCTGCTTCATCGTCACGGTCTGCACCCGAGCTGTCACCAGATGCATCTCCATCTTCTTTGTGGAATTTCAAATGCAGTTTGCTCGGGATTACTCAGGCACAGCATGGATTCACTCTTTAGTGGACTGCGTTACAATGCTCTGCGCGCCGCTTGGCAGCTTCATTGGGAATCGTCTCTCCTGTCGCATTGCTATCATTCTCGGAGGGTTTCTGGCCTCGACGGGTCTTGTCCTGAGCTCTTTCGCCACCAGCCTGGAGTACTTGTATCTGACTCTGGGAATCCTCACAGGTATGGGATTTGCACTGTGCTACACCCCTGCCATTGCCATGGTAGGGAAGTATTTCTGTGAAAGGAAAGCACTGGCTTATGGGATTGCCATGTCAGGCAGCGGAATTGGGACCTTTGTTCTGGCCCCGGCGGTGCAGCTCCTGATAGAGCACTACTCCTGGCGTGGGGCTCTTCTCATCCTGGGGGGGTTCGTGTCCaacctgtgtgtctgtggagcCTTGATGAGACCTATCACTCTTAAAGAAGAGGAAATCAGTGACACTTCACCGGCTGAGACAGAACACGAATACACCATTAAACAAAATTGCTTGAACTCACCGCCGGTGCAGCTGATCAGCAAAGACCGGGAGCAGAGCTGTTTCTGCTTCCAGTCGATCCAAGAGTATCGCTTTCTCCTGATGCCCGACTTCGTGGTGTTGGCGGTGTCCTTCCTCTTCCTGGCCTACGGCTGCAGCGTTCCCTTCGTTTACCTCGTTCCCTACTCCCTGAACGTTGGCGTGAGTCACCAGCAGGCAGCCTTCCTCATGTCTATCTTGGGGGTGATTGACATCGTGGGCAATATCACCTTCGGTTGGCTCACAGACCGCAGGTGTTTAAAGAAGTATCGAAACATCTGCTATATGATCGCAGTAGCCATGGAGGGTCTCTGCTGTCTTTTCATTCCCCTTCTGCAAAGTTTCCCACTCCTGGTGCCTTTTTCAGTGCTGTTTGGCTATTTCGATGGGGCCTATGTGGCCTTAATACCCGTTGTGACATCAGATGTGGTTGGGACTACATATCTTTCTTCAGCTCTGGGAgttgtgtattttcttcatGCAATACCATACCTTGTCAGCCCACCAATTGCAGGCTGGCTGGTAGACAGGACGGGCACCTACACCGCAGCCTTTCTCCTGAGTGGCTTCTCCCTCATCTCCTGCTCAATGCTGCTGTGCGGCGCAGCCGTCATTGAAAAGTGCCGGAGAACACGGTCTGGGACTTACACCACCACTAACACAGAcccaaaactacagaactggaAGAACAGCCAGGCAAATTGCTAGCTTCAGAACAAGAACCAAAGTCTGTGTGATAGAGACACATTTAACACGTCAGCTTGATAGAAACAAactaattttttgttttgtttcttcactcAGTTCagcctgattttgttttgccttttttgtaaTACCAAAGTACAGTACTGTTAAagtatacaataaaatgaaattgtattgATTCTTAAGGAATTTTACAATGATATACACAtattggtgtgtgtgagtgtttatgtgcatgtgtgtctgtacagATTTCATATTTCTTGATTTGATCATGTTGTAAAAAGTATAATACTTTTTATAACTGATCTGGGAGTGTACGAGCTTTCCCCTAATTGCTTAATATGTAAGAATTCGAgaacattattatgattatattttcatGGTATGAAACTAggttaaaactgaaaacattaactTCTTACTAATCATGAATAAGTGGTTCATGTTTTTATGAAGATGACCAAAGTGTGTTGTTATATGGTTAGATGTCTAATACAAATTCAGAAGCTTTATTTTCCATCAAAGTTGGGTAACGTTTACAAAACTTTTTCTCCACACAATGTGGAAGATACtgacagttaaaaaataaaaagtcacagTATAGTCAATGTTCAGGTCAGGACATTTGGTGGTGCCAAAGCAATGGTAATCCTAGATTTGTAAcataatctgtttttttcatctGTAGTCTACTTATGTTTAACCATCAGGCTAAATATCTTATAGTTACCTATGTCAAATCCACCccatcttattttatatttgtttacatgatcTGTGttacttgtttttgtgttctagACCTCTATTTCGAATAATacgtaattattattattatttatttcttagaagacacccttatccagggtgacttacaaaatataagcgcaatacaaagtgcaaacatacagtgcagtacaaggcataacatatttacaaattccaattcacattatatatgaggtcttacatcctgaaCTGTGAAATTGCTTTTGCTTGTATAGTAAGACACAATTGCATGTTTATAGATAATTAAAAGCACCAGAAATTAAAAAGTTGGAAAGTAACACAGGTTATGAAAGCAAGCCATAAGACCtgtatattttgatatttgttcttgtgttgttgtttgtttgttttgtttgttttttaatcatagaTCTCCATCTGGTGGAATATTTTTAGCATTACACACGTGGATTTTGTTCAAAAGGGAACAGCTACTACTTGATCAATCTCTACAGTATTAAGGATTCATATGTAATATCATTATATCATAGAATGTCACACtatgaacaatttaaaaacaaacaattaaaatgttttttgcaaTCGGATTTCAGTCATGCTCATAAAGACAgatgtttgatatattttagcAACTTCCTTACTGTGAGCTTTTTCCtgcaaaatacagcaaaaagtgcaaaaataaacgTAATACTTTAAAACCTGATCTGCTTCCATGTTTGtggtgtaacattttattttagttacctGGACCCATAAAGCCCATGTAATttgctaatttaaaaatgttcagtgtgtatagtacattatcatttgtatttcca

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG:

id description
K11810 SLC16A12; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002910 True 3498 mRNA 0.41 9 6117729 6132219

Neighbor

gene id symbol gene type direction distance location
AMCG00002908 LOC107553481,LOC107753437,LOC107669213,LOC107683711,LOC108413682,LOC107715956,LOC105902286 coding upstream 7217 6094105 ~ 6110512 (+)
AMCG00002911 NA coding upstream 25663 6086560 ~ 6092066 (+)
AMCG00002904 NA coding upstream 78821 6020258 ~ 6038908 (+)
AMCG00002903 NA coding upstream 101484 6011828 ~ 6016245 (+)
AMCG00002900 NA coding upstream 204206 5908977 ~ 5913523 (+)
AMCG00002909 NA coding downstream 25554 6157773 ~ 6158567 (+)
AMCG00002916 acta2,LOC106531354,LOC107683715 coding downstream 57145 6189364 ~ 6193500 (+)
AMCG00002917 NA coding downstream 77509 6209728 ~ 6212571 (+)
AMCG00002918 NA coding downstream 95968 6228187 ~ 6234155 (+)
AMCG00002915 NA coding downstream 122951 6255170 ~ 6266600 (+)
G139351 NA non-coding upstream 298604 5818052 ~ 5819125 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding upstream 675450 5439777 ~ 5442279 (+)
G139238 NA non-coding upstream 751046 5366435 ~ 5366683 (+)
G139205 NA non-coding upstream 878239 5239350 ~ 5239490 (+)
G139170 NA non-coding upstream 1048834 5067472 ~ 5068895 (+)
G139488 NA non-coding downstream 5902 6138121 ~ 6140671 (+)
G139498 NA non-coding downstream 62392 6194611 ~ 6197030 (+)
G139504 NA non-coding downstream 66051 6198270 ~ 6198502 (+)
G139505 NA non-coding downstream 67140 6199359 ~ 6199856 (+)
G139506 stambpl1,LOC107594159,LOC107758441,LOC107683716 non-coding downstream 68984 6201203 ~ 6201470 (+)
G139176 NA other upstream 1018985 5096731 ~ 5098744 (+)
G138941 NA other upstream 2087805 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 2521621 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 3001648 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 3623135 2492086 ~ 2494594 (+)
G139492 NA other downstream 15529 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 934636 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 1244468 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 1777033 7909252 ~ 7920908 (+)
G139784 NA other downstream 1790963 7923182 ~ 7926832 (+)

Expression


Co-expression Network