AMCG00002913


Basic Information

Item Value
gene id AMCG00002913
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6142903 ~ 6144393 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002913
ATGTACAGCCCAATTAATGTGCTCTGTCACCTTTATATTCCCAGTGCCCCACAGAACGCTGACCTTGAAGCCAAGCTGGAGAAACTCGAGTGTCACTTCACATGGGGTTTACAACGAGACAACATTAAAGATCTTGATAACATCCCTGAAAAGCTCCTGGATCGAGTGAAATTCTGCCACCGGCGATATCATGCCACATACTTTAATATACTAGCATATGTTAGCCAGCTAGAGGGAAACAATGAAGCTGCCCTTGAATTCCTCGGCCAAGCAGAGACCATTTTAAGAGGAGAAGATCCATTTTCAGAGGATAGTTTGCTGGTTACGTATGCAAACTTTGCATGGGTTTACTATCACATTGGTAATCTTACTGAAGTGAGTAACTATCTTGGCAAACTGGAAAGCATTTGCAAGGGCATCCCCAGGTCAGCACAGTATTCAGCCAAGGTGCCCGTTGTTTATGGAGAGAAAGGCTGGGCATTTCTCAGACTTGGGGCCGTATTTTATCAGAGTTCAAAGGAAAGTTTCCAGCAGGCTCTCCACGAAGAGCCAGAGAACGTGTCATTTAACATCGGATATGCGGTTGTCCTTTACAGACTCGATGGGCTGAGGGGGAGAAAAATGAATCCGGAATCCAGTGCTGCAGTAAACCAGCTGAGAAAGGTCTTGCAGTTGGAGCCCAGCGATTCTGAGGCCATGGTGCTCTTGGCCCTTAAACTTCAAAATGTCAAGAAAGAAGACTCCTTGAAGCTCGTGACGGAAGCGCTCAGGCTCTCTCCTGACGTGCCTCAGGTGACACGATATGCAGCAAAATATTTCCGAGCAGCAGGGTCTGTTGACAAGTCCTTAGAGATCCTTAAGGAGGCAGTAAAACTGGCCCCCCATTCATCCTTCCTGCACCATCAGATCGGCCTCTGTTACAAACAGCAGCTCATTGACTTGTTCCAGGTCAAGAAAGGCTCCCGACGTGTCCCCGCAGGTGACAAGAGGGCATTGGCTGCTCAGTGCATCTATCATTTCAAAAAGGCTGTGGAAATGAAGCCGTCCAATGTGCATGCTCAAGTCAATTTGGCCGAAGCCTATGGCGAGAACCGGCAATTGGAGGATGCAGAGAAGATCTTCTCTGACCTGCTTGGAGATGGCACCCTGTGCGACTCCGACAGGCAGCACTGTCATGCCAACTATggcttgtttttaatgtacaagAAGAAATCGGAGCTCAGCGCCATAAGACAATTTAAAATTGCATACAAAATGCCAGTGCAGACCCCAGCCAGGAATCTAGCTGGCAGAAAACTCAAACAAATTGCAGAAAGGCAACTCAAATCCAAGGATAGAGTTAGTGAGGGCTTTGAAATGCTGGCTTTTGTGTGCACTGAGGACAAGCAAGAGAGAAAGGCTATGGAGTACACAATGAGGGCAAAGCAGTGTGACACACCCAGCGTGGACAGCCTTAGTTCTGCCTTTACTAAAACAATGAAACTTGAATGA

Function

GO: NA

KEGG:

id description
K24850 IFIT5; interferon-induced protein with tetratricopeptide repeats 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002913 True 1491 mRNA 0.47 1 6142903 6144393

Neighbor

gene id symbol gene type direction distance location
AMCG00002914 NA coding downstream 1891 6132834 ~ 6141012 (-)
AMCG00002905 LOC107584235,LOC100536080,LOC107758424,LOC107669182 coding downstream 56431 6083761 ~ 6086472 (-)
AMCG00002907 NA coding downstream 122761 6016336 ~ 6020142 (-)
AMCG00002906 pcgf5,LOC108410714,LOC106589380,LOC107584148 coding downstream 144130 5974562 ~ 5998773 (-)
AMCG00002901 NA coding downstream 187800 5936812 ~ 5955103 (-)
AMCG00002912 NA coding upstream 29505 6173898 ~ 6179201 (-)
AMCG00002919 stambpl1,LOC106589388,LOC107669191,LOC107594159,LOC107584140,LOC107758441,LOC107683716 coding upstream 52581 6196974 ~ 6201996 (-)
AMCG00002920 NA coding upstream 70466 6214859 ~ 6227743 (-)
AMCG00002922 pten,LOC104929647 coding upstream 153344 6297737 ~ 6319780 (-)
AMCG00002924 papss2,papss2b,paps2,LOC107753426,LOC107584134,LOC107680272,LOC107724695 coding upstream 187257 6331650 ~ 6344823 (-)
G139249 NA non-coding downstream 746344 5396339 ~ 5396559 (-)
G139039 NA non-coding downstream 1558731 4583865 ~ 4584172 (-)
G139029 NA non-coding downstream 1631596 4507504 ~ 4511307 (-)
G139028 NA non-coding downstream 1646541 4496162 ~ 4496362 (-)
G139027 LOC106576780,LOC103360772 non-coding downstream 1647485 4495028 ~ 4495418 (-)
G139496 NA non-coding upstream 13350 6157743 ~ 6158763 (-)
G139593 LOC100846954,LOC107575789 non-coding upstream 337874 6482267 ~ 6510125 (-)
G139639 NA non-coding upstream 857272 7001665 ~ 7073536 (-)
G139668 NA non-coding upstream 1074476 7218869 ~ 7219192 (-)
G139752 NA non-coding upstream 1311151 7455544 ~ 7458491 (-)
G138932 NA other downstream 2140099 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 2189579 3928761 ~ 3953324 (-)
G138741 NA other downstream 3423484 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 5217505 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 5321312 805760 ~ 821591 (-)
AMCG00002935 LOC106589936 other upstream 918080 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 1204418 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 1786773 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 2340968 8485361 ~ 8494596 (-)
G140006 NA other upstream 2702639 8847032 ~ 8847840 (-)

Expression


Co-expression Network