AMCG00002914


Basic Information

Item Value
gene id AMCG00002914
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6132834 ~ 6141012 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002914
ATGATGTTAAACCAGGATCCCTTGAAAACCAAGCTGGAAATGCTGGAATGCCACTTCACCTGGGGTCTACCTGAGGCAGCACTAGCAAGCCTAGAGGAGGCTGATAAAACTACCAGGAAGAACTTTGACAATGAATGTGAGAAGATGCTCATTGTTCCTTACGGAGACTTTGCCTGGCTGTACTACAAGATGGGGGACCACACTAACGCTCAGCGCTACCTGGAGAAACTGGCACAGATTGCAGACAAGTTCCCCAGAGCTTCTCCTGTCATCCTTCATCCAGAATTGTATGGGGAAAAGGCCTGGTCTCTTCTCAAGTTTTCATCGGAGAATTATGAGTTGGCAAAGACATTTTTTGAGATGGCTCTAAAAGAACAACCAGAAAACAAGGAATGGCATTCAGGGTATGCTATTGTCCTTACCCGGCTTGAAGGTTTAGGTGACACTGATCTTGACGACCTTCAGGACAGACTTCACGTGTCGACTGAGATATGCCTTGGGAAAGAAGCAGGAACTGCACGCTCCTACAACCTGCTGGCTTTCACAAAGTACCTGCAGGGATTCAATGAAGAAGCACTGAAGAATCTGGAAAAGGCTGAAGAACTGATAAGAAATCACTCTGGAGATGAATGTGAGAAGCTGCTCATTGTAACGTACGGTGATTTTGCCTGGGTGTATTACTACATGGCTCAGCTGACTAAAGCACAGAGCTACCTGGAGAAGCTGGGAGAGATTAAAGAGAAGTTCCCCACAGTCTCTCCTGATGTTCTGCACCCTGCCACCTATGCTGAGAAAGCCTGGAGCTTTCTGAAGTTCAGTCGGAAACACTACATAGAGGCAAAAGAGTGTTTCGAGAAGGCTATGGAAGAGGAGCCGGATGACAGCGAGTGGAATTCTGGGTATGCCATTACACTGTATCGGCTTGAAGGGTTTCAGTCTACACTGGTTAGTGCTGAAGACTCAGCTGCCCTCAAACAGTTAAGACGGGCCCTGGAGCTCAATCCAGATGACCGTATCATCATGGTCCTCTTGGGGCTGAAGCTTGCAGATTATAAAGAAATTGAGGAAGCTACAGAGTTAGTGGAGAAAGCTCTGGAGATGTCACCAGATGAGCCCCATGTAATCCGATATGTGGCAAAGTTTTACAGACAGCAGGGAACTGTGGATAAATCCATTGAACTCCTGCAAAGGGCATTGGAAAAGACCCCAAATTCAGCGTTTCTCCACCACCAGATAGCACTCTCttacaagaggaaaaaaagcaatttgaTTAAAAGTTGTGGCCGTGCTCGTGATGCAGAGATCAATGAGCTCCACAGGCTGTGCATCTTTCACTTGGAGAAAACAATCATGCAGAAGCCATCTTTTATTTATGCAATAATAGATCTGGCCAACTTGTATGCTCAATCTAGAGACATTCCCAAAGCAGAAGAattgtttcacaaaatatttcCCATTGCCAAAGCCAAGAATGAATGTGTACAGTCACTACATCTATCTTATGGAGATTTTCTGTTCTATCACAAGAGAAAAGAGTCTCTTGCTATTAAGCACTACACAGAAGGATCAAAGTTGGATCAACGCACACTAGACTGGGAAAGATGCCTTGATAAACTGAGTGCCAttgcagagaaaaacatttcaaggaATTCCCAGAAAGGAGAAGCCTTCGGTATTCTGGGATTTgtgcataaaatgaaaaatgagaaaaaacacGCAGTTGACTGTTACGAGAAGGCGCTGCTATGTGACTCTGGCAATGAAGACTACCTATCTGCTCTCTGTGACCTGCGTCTTTCATTGGAGTAG

Function

GO: NA

KEGG:

id description
K24850 IFIT5; interferon-induced protein with tetratricopeptide repeats 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002914 True 1809 mRNA 0.45 4 6132834 6141012

Neighbor

gene id symbol gene type direction distance location
AMCG00002905 LOC107584235,LOC100536080,LOC107758424,LOC107669182 coding downstream 46362 6083761 ~ 6086472 (-)
AMCG00002907 NA coding downstream 112692 6016336 ~ 6020142 (-)
AMCG00002906 pcgf5,LOC108410714,LOC106589380,LOC107584148 coding downstream 134061 5974562 ~ 5998773 (-)
AMCG00002901 NA coding downstream 177731 5936812 ~ 5955103 (-)
AMCG00002902 tnks2,LOC107654041,LOC108431390,LOC108274191 coding downstream 232616 5887057 ~ 5900218 (-)
AMCG00002913 NA coding upstream 1891 6142903 ~ 6144393 (-)
AMCG00002912 NA coding upstream 32886 6173898 ~ 6179201 (-)
AMCG00002919 stambpl1,LOC106589388,LOC107669191,LOC107594159,LOC107584140,LOC107758441,LOC107683716 coding upstream 55962 6196974 ~ 6201996 (-)
AMCG00002920 NA coding upstream 73847 6214859 ~ 6227743 (-)
AMCG00002922 pten,LOC104929647 coding upstream 156725 6297737 ~ 6319780 (-)
G139249 NA non-coding downstream 736275 5396339 ~ 5396559 (-)
G139039 NA non-coding downstream 1548662 4583865 ~ 4584172 (-)
G139029 NA non-coding downstream 1621527 4507504 ~ 4511307 (-)
G139028 NA non-coding downstream 1636472 4496162 ~ 4496362 (-)
G139027 LOC106576780,LOC103360772 non-coding downstream 1637416 4495028 ~ 4495418 (-)
G139496 NA non-coding upstream 16731 6157743 ~ 6158763 (-)
G139593 LOC100846954,LOC107575789 non-coding upstream 341255 6482267 ~ 6510125 (-)
G139639 NA non-coding upstream 860653 7001665 ~ 7073536 (-)
G139668 NA non-coding upstream 1077857 7218869 ~ 7219192 (-)
G139752 NA non-coding upstream 1314532 7455544 ~ 7458491 (-)
G138932 NA other downstream 2130030 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 2179510 3928761 ~ 3953324 (-)
G138741 NA other downstream 3413415 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 5207436 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 5311243 805760 ~ 821591 (-)
AMCG00002935 LOC106589936 other upstream 921461 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 1207799 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 1790154 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 2344349 8485361 ~ 8494596 (-)
G140006 NA other upstream 2706020 8847032 ~ 8847840 (-)

Expression


Co-expression Network