AMCG00002919 (stambpl1,LOC106589388,LOC107669191,LOC107594159,LOC107584140,LOC107758441,LOC107683716)


Basic Information

Item Value
gene id AMCG00002919
gene name stambpl1,LOC106589388,LOC107669191,LOC107594159,LOC107584140,LOC107758441,LOC107683716
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6196974 ~ 6201996 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002919
ATGGATACATTAGGAAGAACAGATCCTCCCAGTCTACAGCCCACAGGAAACATGGACCAGACATTTAGCTTCAGCACACTGAAGAAGCTCGCAGCTGAGCCCGACCACACTGACGTGAGCCTGCCGGCAGTGGAGCGGGTCCGAGCCCTGAGCAAGATGGGCTGCAACATCGAGATCAACGAAGACATCACGCCCCGGCGCTACTTCCGCTCCGGGGTGGAGATGGAGCGCATGGCGGCAGTGTACCTGGAGGAGGGCAGCCTGGAGAACGCCTTCGTGCTCTATAACAAGTTCATCACtttatttgtagAAAAGCTGCCCAGCCATCGGGACTACCAGCAGTGCGCCGTTCTGGAGAAGCAGGTCATAATGAAGAAATTACAAGAAGTTGCATTTCCAAGGACCGATAAGCTGAAGAAGCTCCTTCAGGAGAAATACAACAAAGAACACATGGATTATGTGAAGAATCAAAGCCAGCCTGTGGAGGATTGCAGTCTGCAGATGAAAAAGCTGTCCttgctggaggaggagaagcaaCGGGTGGCTCAGCTGCgaaaaatgcaaattgaatCGGAGCAGTTCCGCTACTTCGAAGACCAACTGCGCAGACAGGAGCTGGCCAACAAGAAAGATGAGGTCGTCCACAAAGTGCCTGAGCAAACGGATGGGTCCTGTCTGGCCCGTCCTCCCAAAAACAACTCCCGCCCCGAGGCCAACCGGAAAAACAACCAATCCCCTCCCGTCAACAAAGCCCTGAATCCAGCTGCCACACTGGGCGCCATACAGAATCAGAAGGTGGAAGGGTTGAGAAGCGTTGTGATTCCCAGAGACCTGTCGTACAAGTTTCTGCTTCTTGCTGACAGCAATACAGCCAGAGGAATTGAAACCTGTGGAATTCTGTGTGGCAAACTGACTCATAATGAGTTCATGATCACCCACGTTATCATACCCAAGCAGTCTGCGGGTCCCGACTACTGTGACATGGAGAACGTGGAAGAGCTCTTCAGCTTTCAGGATCAGCACGACCTCCTCACTTTAGGATGGATCCATACGCACCCGACTCAAACCGCCTTCCTCTCCAGTGTGGACCTGCACACCCACTGCTCCTACCAGCTGATGTTGCCCGAAGCTATCGCAATCGTGTGCTCTCCAAAACACAACGACACTGGGGTGTTCAGGCTGACAGGAGCAGGAATGCTGGAGGTCGCTGGCTGTAGGATGAAGGGGTTCCATCCACACTCCAAGGACCCTCCATTATTTAACATATGTAAACATGTTGTGGTGAAGGACATGAAGACAACAGTCCTGGACCTGAGGTGA

Function

symbol description
stambpl1 Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein K63-linked deubiquitination. Predicted to act upstream of or within protein deubiquitination. Predicted to be active in endosome and membrane. Orthologous to human STAMBPL1 (STAM binding protein like 1).

NR:

description
PREDICTED: AMSH-like protease isoform X1

GO: NA

KEGG:

id description
K11867 STAMBPL1; AMSH-like protease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002919 True 1320 mRNA 0.53 10 6196974 6201996

Neighbor

gene id symbol gene type direction distance location
AMCG00002912 NA coding downstream 17773 6173898 ~ 6179201 (-)
AMCG00002913 NA coding downstream 52581 6142903 ~ 6144393 (-)
AMCG00002914 NA coding downstream 55962 6132834 ~ 6141012 (-)
AMCG00002905 LOC107584235,LOC100536080,LOC107758424,LOC107669182 coding downstream 110502 6083761 ~ 6086472 (-)
AMCG00002907 NA coding downstream 176832 6016336 ~ 6020142 (-)
AMCG00002920 NA coding upstream 12863 6214859 ~ 6227743 (-)
AMCG00002922 pten,LOC104929647 coding upstream 95741 6297737 ~ 6319780 (-)
AMCG00002924 papss2,papss2b,paps2,LOC107753426,LOC107584134,LOC107680272,LOC107724695 coding upstream 129654 6331650 ~ 6344823 (-)
AMCG00002923 NA coding upstream 143844 6345840 ~ 6354866 (-)
AMCG00002927 a1cf coding upstream 220008 6422004 ~ 6429440 (-)
G139496 NA non-coding downstream 38211 6157743 ~ 6158763 (-)
G139249 NA non-coding downstream 800415 5396339 ~ 5396559 (-)
G139039 NA non-coding downstream 1612802 4583865 ~ 4584172 (-)
G139029 NA non-coding downstream 1685667 4507504 ~ 4511307 (-)
G139028 NA non-coding downstream 1700612 4496162 ~ 4496362 (-)
G139593 LOC100846954,LOC107575789 non-coding upstream 280271 6482267 ~ 6510125 (-)
G139639 NA non-coding upstream 799669 7001665 ~ 7073536 (-)
G139668 NA non-coding upstream 1016873 7218869 ~ 7219192 (-)
G139752 NA non-coding upstream 1253548 7455544 ~ 7458491 (-)
G139825 NA non-coding upstream 1744056 7946052 ~ 7946521 (-)
G138932 NA other downstream 2194170 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 2243650 3928761 ~ 3953324 (-)
G138741 NA other downstream 3477555 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 5271576 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 5375383 805760 ~ 821591 (-)
AMCG00002935 LOC106589936 other upstream 860477 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 1146815 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 1729170 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 2283365 8485361 ~ 8494596 (-)
G140006 NA other upstream 2645036 8847032 ~ 8847840 (-)

Expression


Co-expression Network