AMCG00002920


Basic Information

Item Value
gene id AMCG00002920
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6214859 ~ 6227743 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002920
ATGCAGCCCGGGCGGAGCAGAAATGGTGACCCCGCAGTGGGCGTGGCCTGCGTCTGCGTCACTTGCGTCGGCTCCTACGTCGATCTGCTGATTTCTGAAGACAGCCCCAGGAGCTGCCTCCAAACTGGGGCTGTCCGATGTGAGGAAGCCTTCAGGAGAAACAAAAGGGAGCTGGATCCTGAAGTGAAAATGAACATTAGTGAGATCATCACTTATTGGGGTTACCCATCAGAGGAGTATCCAGTGATTACTGAAGATGGCTACATCCTGTCGATCAACAGAATCCCACACGGCATTCAAATTAATGAATCCAAAGGAGTGAGACCAGTGGCCTTCCTTCAGCACGGTCTGCTGGCTGCTGGGAGCAACTGGATCACCAACCTGCCTAACAGCAGCCTGGCCTTCATCCTGGCTGACGCCGGCTACGACGTGTGGATTGGAAACAGCCGTGGGAACACCTGGTCCAGCAAACATGTGACTCTCTCGCCAGACCAGGATGCCTTCTGGGCATTCAGTTTTGATGAAATGGCGAAGAAAGACCTTCCAGCAGTGATTAATTTCATCACTAAGAGCACAGGCCAGGAGCAGGTCTACTATGTGGGCCACTCTCAGGGCACGACCATAGCCTTTATAGCCTTCTCCACCATGCCTGAATTGGCTAGCaaaatcaagatgttctttgcCTTGGCTCCAGTAGCTACAGTGGATTTCGCCACCAGCCCCCTGACCAAACTCTCTTTCATTCCAGAATACTTTGTCTGGGACTTCTTTGGAAGTAAGGACTTCTTGCCCCAGGGCCCTCTGATTAAGTGGTTTGCCACCAAATTCTGTAGCCACGATCCACTATCTGAGCTGTGtggaaatattttctttgtccTGTGTGGTTTCGATGAGAAAAACCTGAACATGCTTGTGAAAACTGGGACGCTGATGGCATATGACTATGGCAGGGCGGGAAACATGGCGCATTACAACCAGCCCACTCCCCCGCTGTATCACGTCCGAGACATGAAGGTCCCAACGGCCATGTGGTCGGGTGGGCACGACACCCTGGCTGACCCCAAAGACATGGCCGTGCTCCACACCCAGATCTCAAACCTGgtgtactataaaaacatcccCCACTGGGAACATCTGGACTTCATCTGGGGGCTGGACGCTCCCCAGCTTATGTACGATCAGATAGTTAAGCTCATGAACCAGCATGCTTGA

Function

GO:

id name namespace
GO:0001666 response to hypoxia biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
K01052 LIPA; lysosomal acid lipase/cholesteryl ester hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002920 True 1212 mRNA 0.52 9 6214859 6227743

Neighbor

gene id symbol gene type direction distance location
AMCG00002919 stambpl1,LOC106589388,LOC107669191,LOC107594159,LOC107584140,LOC107758441,LOC107683716 coding downstream 12863 6196974 ~ 6201996 (-)
AMCG00002912 NA coding downstream 35658 6173898 ~ 6179201 (-)
AMCG00002913 NA coding downstream 70466 6142903 ~ 6144393 (-)
AMCG00002914 NA coding downstream 73847 6132834 ~ 6141012 (-)
AMCG00002905 LOC107584235,LOC100536080,LOC107758424,LOC107669182 coding downstream 128387 6083761 ~ 6086472 (-)
AMCG00002922 pten,LOC104929647 coding upstream 69994 6297737 ~ 6319780 (-)
AMCG00002924 papss2,papss2b,paps2,LOC107753426,LOC107584134,LOC107680272,LOC107724695 coding upstream 103907 6331650 ~ 6344823 (-)
AMCG00002923 NA coding upstream 118097 6345840 ~ 6354866 (-)
AMCG00002927 a1cf coding upstream 194261 6422004 ~ 6429440 (-)
AMCG00002932 LOC106589399,LOC101467287,LOC102215614 coding upstream 417889 6645632 ~ 6737274 (-)
G139496 NA non-coding downstream 56096 6157743 ~ 6158763 (-)
G139249 NA non-coding downstream 818300 5396339 ~ 5396559 (-)
G139039 NA non-coding downstream 1630687 4583865 ~ 4584172 (-)
G139029 NA non-coding downstream 1703552 4507504 ~ 4511307 (-)
G139028 NA non-coding downstream 1718497 4496162 ~ 4496362 (-)
G139593 LOC100846954,LOC107575789 non-coding upstream 254524 6482267 ~ 6510125 (-)
G139639 NA non-coding upstream 773922 7001665 ~ 7073536 (-)
G139668 NA non-coding upstream 991126 7218869 ~ 7219192 (-)
G139752 NA non-coding upstream 1227801 7455544 ~ 7458491 (-)
G139825 NA non-coding upstream 1718309 7946052 ~ 7946521 (-)
G138932 NA other downstream 2212055 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 2261535 3928761 ~ 3953324 (-)
G138741 NA other downstream 3495440 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 5289461 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 5393268 805760 ~ 821591 (-)
AMCG00002935 LOC106589936 other upstream 834730 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 1121068 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 1703423 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 2257618 8485361 ~ 8494596 (-)
G140006 NA other upstream 2619289 8847032 ~ 8847840 (-)

Expression


Co-expression Network