AMCG00002936


Basic Information

Item Value
gene id AMCG00002936
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7077934 ~ 7081623 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002936
ATGTCTGACTCGGATAATGCCCCGAGTACTTCAGCTGCCTCGGGTTCAAGGCCGAGCTTTGCCCTGGGGAGAGGTCTGCCCTGCCGGGTGTCTCTCAGCCCACCTCCCCCAGGCAGACTCAGCTCACTACGGTCAAGAGACCTGACGTTGGGAGGGTTTAAAAAGaaaacatttgttcCAAATATACACTCCGTTAGGAAAAACAAAGATGAACCCAGGGAAGAGTCCCGTACGGCtccaaagaaggaaaagagggagaaagaagaCCGACAGAAGGATGGGAGAGGGAAACGGAGGGAGCGGCCACAAACCATTCAGTCGCACTCTATATTTGAGCAAGGTCCTGCTGATACAATGAGGAGAATAGGGAGCTGGGACAGTACTGACATGAGTGAGTGTGGACCGCCTcccgttttaaaatgcattaaaaaggaaaagcatgCTTTCGAAGAGGAGGAGAGTGAAATTTTACAAAAACTCAAACGGGACGATTTTTTAGATGACCCAGGACTCAAAAACGATGCAAGGAACAGACCCATTCAGCTTCCATTATATCAATcgatagatttttttaatggagacGAGCCAACTGGGAACATGAAGGAAGAACCTCccagagaggagaaaaaaacatccagtgcACAGCAGTACAAACATCCACAAAGGGTGAAAGCCGTGTCTAACCCTCAACAGCCGGCTGTGGCTGAACTCTTCCAGCAGCTCAGCCTGTCTAACGACGACCAGCTGCTGTTCATTCAGCTCCCCGATACCATTCCAGGAGAGACGCCGACAAGCGCTgataaaatggcaaaaaaagATGGCAAATCCGAAGACAAGCAGACAGCGCCGTTTAAGATTCCAGATCCTGCAGGAAAAGAAAGCACACCCACTCTGTCAGATTTCTCTGAGGGACTTATTGGGAAAGTGCAGATTCGAAAATCCGGCAAAGTTCAGCTGGCGCTGGGCGAGGTCATAATGGATGTTTCTGAAGGAGCAGCGTTTTCATTTCTACAGCAACTGGTGTCCGTCCGGCTGTCCGACGGCCTCACTGGTGACATGACCGTCCTCGGAAACGTCAGACACAAGCTGGTGTGCTCTCCAGACTTTGAAGCACTTCTGAAGGAA

Function

GO:

id name namespace
GO:0006383 transcription by RNA polymerase III biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002936 True 1125 mRNA 0.50 8 7077934 7081623

Neighbor

gene id symbol gene type direction distance location
AMCG00002934 NA coding downstream 18046 7040280 ~ 7059888 (-)
AMCG00002933 pcdh15b,LOC108273410,LOC106578947 coding downstream 321143 6743734 ~ 6756791 (-)
AMCG00002932 LOC106589399,LOC101467287,LOC102215614 coding downstream 340660 6645632 ~ 6737274 (-)
AMCG00002927 a1cf coding downstream 648494 6422004 ~ 6429440 (-)
AMCG00002923 NA coding downstream 723068 6345840 ~ 6354866 (-)
AMCG00002941 NA coding upstream 107714 7189337 ~ 7197989 (-)
AMCG00002948 chat,LOC107588646,LOC107683741,LOC107707518,LOC108245700 coding upstream 281429 7363052 ~ 7371613 (-)
AMCG00002947 NA coding upstream 320958 7402581 ~ 7407518 (-)
AMCG00002951 NA coding upstream 352628 7434251 ~ 7446572 (-)
AMCG00002950 ghitm coding upstream 378309 7459932 ~ 7468014 (-)
G139639 NA non-coding downstream 4398 7001665 ~ 7073536 (-)
G139593 LOC100846954,LOC107575789 non-coding downstream 567809 6482267 ~ 6510125 (-)
G139496 NA non-coding downstream 919171 6157743 ~ 6158763 (-)
G139249 NA non-coding downstream 1681375 5396339 ~ 5396559 (-)
G139039 NA non-coding downstream 2493762 4583865 ~ 4584172 (-)
G139668 NA non-coding upstream 137246 7218869 ~ 7219192 (-)
G139752 NA non-coding upstream 373921 7455544 ~ 7458491 (-)
G139825 NA non-coding upstream 864429 7946052 ~ 7946521 (-)
G139867 NA non-coding upstream 1029402 8111025 ~ 8115245 (-)
G139881 NA non-coding upstream 1099667 8181290 ~ 8181576 (-)
AMCG00002935 LOC106589936 other downstream 11584 7062473 ~ 7066350 (-)
G138932 NA other downstream 3075130 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 3124610 3928761 ~ 3953324 (-)
G138741 NA other downstream 4358515 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 6152536 920788 ~ 925398 (-)
AMCG00002945 NA other upstream 267188 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 849543 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 1403738 8485361 ~ 8494596 (-)
G140006 NA other upstream 1765409 8847032 ~ 8847840 (-)
G140015 NA other upstream 2155035 9236658 ~ 9237730 (-)

Expression


Co-expression Network