AMCG00002938


Basic Information

Item Value
gene id AMCG00002938
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7075274 ~ 7077227 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002938
TGCACCTGTGTGGCTCCAGCAGTGAAATCTTTCAGCACCAGCAGTAACATCCCCCCCAAGAGACCTATGACCGGCTACCTGCGATttgtgaagcagcagcagcccatTGTCATCAAGCAGAACCCAGACGTGAAGATTGTGGATATAACTAGAAAGATTGCACAGGCATGGCGGATGTTATCGCCTGAAGAGAAACGGCCATTCCAGGAGGCTGCCCTTGCCGCTAGGGAGCAGTATAAAGAAGAGGTAATGAAATACAAAGAACAGCTAACCCCTGCCCAGACTGCTGCATTGAAGGAGGAGCACAGACAGAAACTGGCTAAACGGAAGGCGATAAGGAAAAAGAGGGAGCTGACCATGTTGGGTAAGCCCAAACAACCCAGGTCTTCTTTCAATATCTTCATGGCTGAGCACTTTGAAGAAGCAAAAGGCGGGTCCATGCAGATGAAGCTGAAATCGTTAATTGATGACTGGCAGGTTCTACATGCTTCACAGAAACAGGTGTACATGCAGCTTGCAGAGGATGATCGAATCCGCTACAAAAACGAAAAGAAGTCTTGGGAGGAGCATATGATCGAAATTGGACGAGAGGACCTCATTCGAAGGAAGAAAAGGCCCAAAGCTACTGCTAAATCAAAAGGAATAAATAAGCCTAAAgtgaaatctattaaaaaagTGACTGCAAAGTCTGCGGGTGCTGGTTCTGGTACAAAAAAGGCTGGCGGTACTGGTTCTGGTGCAAAAAAGGTTGGAGGTACTGATTCTGGTGCAGGGAAATCAACAAGAAGGGTGAAAAAGGCTGAAGAATGA

Function

GO: NA

KEGG:

id description
K11830 TFAM, MTTFA; transcription factor A, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002938 True 810 mRNA 0.47 6 7075274 7077227

Neighbor

gene id symbol gene type direction distance location
AMCG00002931 NA coding upstream 494244 6578983 ~ 6581030 (+)
AMCG00002929 LOC106578950,LOC106589397 coding upstream 500003 6556470 ~ 6575271 (+)
AMCG00002930 prkg1,prkg1b,LOC107708873,LOC107695529,LOC106589397 coding upstream 610998 6463713 ~ 6464276 (+)
AMCG00002928 LOC106589397 coding upstream 620133 6454872 ~ 6455141 (+)
AMCG00002926 NA coding upstream 655891 6410426 ~ 6419383 (+)
AMCG00002937 bicc1,bicc1b,LOC107653928,LOC107695510,LOC107596591 coding downstream 54949 7132176 ~ 7152164 (+)
AMCG00002940 phyhiplb,phyhipl,LOC107654056,LOC107746456,LOC107695536,LOC107727060 coding downstream 89291 7166518 ~ 7189805 (+)
AMCG00002943 NA coding downstream 148562 7225789 ~ 7267878 (+)
AMCG00002944 NA coding downstream 194700 7271927 ~ 7310924 (+)
AMCG00002942 ogdhl,LOC107707496,LOC107683740 coding downstream 236715 7313942 ~ 7346948 (+)
G139633 NA non-coding upstream 8900 7062523 ~ 7066374 (+)
G139572 a1cf,LOC107708930,LOC107695528,LOC107654048,LOC107739758 non-coding upstream 652106 6420166 ~ 6423168 (+)
G139573 NA non-coding upstream 656476 6418438 ~ 6418798 (+)
G139531 NA non-coding upstream 764004 6297734 ~ 6311270 (+)
G139507 NA non-coding upstream 872215 6202844 ~ 6203059 (+)
G139656 NA non-coding downstream 75310 7152537 ~ 7152739 (+)
G139667 NA non-coding downstream 119651 7196878 ~ 7197097 (+)
G139827 NA non-coding downstream 875899 7953126 ~ 7953340 (+)
G139832 NA non-coding downstream 920986 7998213 ~ 7999259 (+)
G139836 NA non-coding downstream 925575 8002802 ~ 8003057 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other upstream 1736 7066855 ~ 7073538 (+)
G139492 NA other upstream 922154 6147748 ~ 6153120 (+)
G139176 NA other upstream 1976530 5096731 ~ 5098744 (+)
G138941 NA other upstream 3045350 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 3479166 3428689 ~ 3596108 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 299460 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 832025 7909252 ~ 7920908 (+)
G139784 NA other downstream 845955 7923182 ~ 7926832 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 960350 8037577 ~ 8044413 (+)
AMCG00002982 NA other downstream 1415778 8493005 ~ 8496965 (+)

Expression


Co-expression Network