AMCG00002942 (ogdhl,LOC107707496,LOC107683740)


Basic Information

Item Value
gene id AMCG00002942
gene name ogdhl,LOC107707496,LOC107683740
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7313942 ~ 7346948 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002942
ATCACAGCTCATTTGGaagtaaatgcatttcagtCCTGAAGGATTTTGATTTCATTAGACCATCTGACTTTGACAAGACCTGTGCCAAGATGGACGACCCCACAGGAGCAGCATCAGAGACCCCCACGGGGCCAGAAGAAATGAGCCACTTCAGGTCTCTTGCTGGTGTCCTGAAATTACAGAACCTGCAGTGTTTCAGGAAGCCTGCTGTGGCAGGAAGGAGTTTCTTTCCAAACAGGAGGTGCTGTTCCTCTGGGGCCACACAGCCGCTCGTGAATGGCTGCAGCTCCAACTACGTGGAAGAGATGTATTATGCATggctggaaaataataaaaatgttcacgAGTCATGGGATGTTTTTTTCCGCAATGTGAGTGCCGGTGCCTCCTCTGGCGATGCTCTTCAGAAGACTGCTTCCTCGCTCTTTCACAGTCAGGGTCTCGCCCAGGCGCCTGCTCAGGCCGAAAAAGTAGTCGAGGATCACCTTGCAGTGCACTCCCTTATAAGAGCCTATCAGATCCGGGGTCACCACGTGGCTCAGTTAGACCCTCTTGGGATCCTGAACGCTGACTTGGATTCTTTTGTTCCAGCTGATTTAATCACGACTATTGATAAACTGGGATTTTATGGTCTCCTTGAATCTGACCTGGATAAAATGTTCCAACTTCCATCCACCACCTTTATTGGAGGGCTTGACACTGCTCTGCCTTTACGGGAAATAATACGAAGATTAGAGACTTCTTATTGTGGCCACATTGGTGTTGAGTTCATGTTCATCAATAACATGGAGCAATGCCAGTGGATCAGACAGAAATTTGAGACCCCAGATATCATGAAGTTCACCAGTGAGGAAAAGAGGACCCTTCTGGCCAGGCTTATCCACTCAACAAGGTTTGAAGATTTCTTGGCTCGGAAGTGGTCCTCTGAAAAGCGTTTTGGTTTGGAGGGCTGTGAAGTTCTTATTCCAGCTCTGAAGACTATAATTGATAAGTCCAGTGAGGCAGGTATAGACAGTGTCATCATGGGGATGCCTCACAGgGGACGATTAAATGTGTTGGCCAATGTTGTAAGGAAGGATTTGAATCAGATCTTCTGTCAGTTTGACCCTAAACTGGAGGCTGCGGACGAGGGCTCAGGGGATGTTAAGTATCACCTTGGACTCTATCATGAGAGAGTCAACCGTGTGACTGACAAGAACATCACGCTCTCTCTCATGGCAAACCCTTCTCATCTGGAGGCCGTAGATCCTGTGGTCCAGGGCAAGGCCAAGGCAGAGCAGTTCTACCGGGGAGACATCGATGGCAAGAAGgtgaTGTCCATCCTAATGCATGGTGATGCTGCATTTGCTGGTCAAGGAATTGGATTTACTACCGATCCCCGAATGGCCCGTTCCTCTCCGTACCCCACTGATGTAGCCCGTGTTGTCAACGCGCCAATTTTCCATGTCAATGCTGATGATCCCGAAGCAGTGATGTATGTGTGCAAAGTGGCGGCCGAGTGGAGGAGCACATTCAACAAGGATGTTGTTATAGACTTGGTCAGCTACCGCAGATTTGGGCATAATGAAATGGACGAACCCATGTTCACTCAGCCTCTGATGTACAAGCAGATCCGCAGACAGGTGCATGTGCTGAAAAAGTACTCCGATAAACTGATAGCTGAAGACACTGTGACGCTGCAGGAGTTTGAGGAAGAAATTTCCAAGTATGATAGGATCTGTGAAGAGGCCTACACCAGCTCCAAGGATGCGAAGATCCTACACATCAGTCACTGGCTGGACTCCCCTTGGCCTGATTTCTTCACAGCTGATGGCGAACCTAAGAGTATGAGCTGCCCTCTTACTGGTTTAGAGGAAGATGTTTTACAGCACATCGGAAACATTGCCAGCTCTGTCCCAATGCAAGACTTCACCATTCATGCAGGTCTGTCTCGTATCCTGAGGGGCAGGTCAGAAATGACGAGGAAGCGGAGGGTCGACTGGGCTCTGGCAGAATACATGGCTTTCGGTTCCCTATTGAAGGATGGCATCCACGTCAGACTGAGTGGGCAGGATGTGGAGAGAGGTACTTTTAGTCACCGCCATCATGTACTGCATGACCAGGAAGTAGATAAGAGGACCTGTGTCCCGATGAACCATCTGTGGCAGAATCAAGCTCCTTACACTGTGTGCAACAGCTCCTTGTCTGAGTATGGAGTCTTGGGTTTTGAACTTGGATTTGCAATGGCAAGCCCCAATGCGCTGGTCTGCTGGGAGGCCCAGTTCGGAGATTTTCATAACACAGCTCAGTGCATTATAGACCAGTTCATCAGCTCTGGGCAGGCCAAATGGATGCGACACAATGGCATTGTCTTAATGCTTCCTCACGGCATGGAGGGAATGGGTCCGGAGCACTCCTCCGCCCGGCCCGAACGCTTCCTGCAGATGAGTAACGATGACTCGGATGCTTATCCAGAAATCACAGAAGACTTTGAGGTCCATCAACTCTATGACTGTAACTGGATTGTGGTGAATTGCTCAACACCTGCCAATTACTTCCATGTTTTGAGAAGGCAGATCTTGTTACCATTCAGGAAGCCGTTAATTATCTTCACTCCCAAATCTTTGCTGAGGCATCCAGAAGCCAGATCAAGTTTTGATGACATGATCACAGGCACAAGATTCAGGCGAATGATACCTGAGGAGGGAATAGCAGCCCAGAGTCCAGACAACGTGAAGAGAGTTATATTCTGCACCGGGAAGGTTTATTATGAACtggcaaaagaaagaaaacaacaggatTTGGAGAGCGAAGTAGCAATTGTTAGGTTGGAACAGaTCTCTCCATTCCCCTTTGACTTGGTCAAAGCAGAGGtagaaaaatatgcaaaagCTGAACTTGTCTGGTGCCAAGAAGAGCATAAGAACATGGGCTACTATGAATACATCAAACCCCGCTTCCTCACTGTCCTGTCCCAAGATCGCCCGATATGGTATGTTGGTCGAGATCCTGCCGCTGCTCCGGCCACAGGCAATAAAAACACTCACCTGACTGAGCTCAAGAGATACCTGGACACTGTATTCAACCTGCAGGCTTTTGAAGGGAAGAAATTC

Function

symbol description
ogdhl Predicted to enable oxoglutarate dehydrogenase (succinyl-transferring) activity and thiamine pyrophosphate binding activity. Predicted to act upstream of or within tricarboxylic acid cycle. Orthologous to human OGDHL (oxoglutarate dehydrogenase L).

NR:

description
2-oxoglutarate dehydrogenase-like, mitochondrial

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity molecular_function

KEGG:

id description
K00164 OGDH, sucA; 2-oxoglutarate dehydrogenase E1 component

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002942 True 3092 mRNA 0.49 23 7313942 7346948

Neighbor

gene id symbol gene type direction distance location
AMCG00002944 NA coding upstream 3018 7271927 ~ 7310924 (+)
AMCG00002943 NA coding upstream 46064 7225789 ~ 7267878 (+)
AMCG00002940 phyhiplb,phyhipl,LOC107654056,LOC107746456,LOC107695536,LOC107727060 coding upstream 124137 7166518 ~ 7189805 (+)
AMCG00002937 bicc1,bicc1b,LOC107653928,LOC107695510,LOC107596591 coding upstream 161778 7132176 ~ 7152164 (+)
AMCG00002938 NA coding upstream 236715 7075274 ~ 7077227 (+)
AMCG00002946 LOC108442250 coding downstream 65161 7412109 ~ 7425081 (+)
AMCG00002949 NA coding downstream 142423 7489371 ~ 7500590 (+)
AMCG00002952 pax2a,pax2 coding downstream 348411 7695359 ~ 7733537 (+)
AMCG00002955 NA coding downstream 465561 7812509 ~ 7821463 (+)
AMCG00002959 NA coding downstream 481143 7828091 ~ 7829718 (+)
G139667 NA non-coding upstream 116845 7196878 ~ 7197097 (+)
G139656 NA non-coding upstream 161203 7152537 ~ 7152739 (+)
G139633 NA non-coding upstream 247568 7062523 ~ 7066374 (+)
G139572 a1cf,LOC107708930,LOC107695528,LOC107654048,LOC107739758 non-coding upstream 890774 6420166 ~ 6423168 (+)
G139573 NA non-coding upstream 895144 6418438 ~ 6418798 (+)
G139827 NA non-coding downstream 606178 7953126 ~ 7953340 (+)
G139832 NA non-coding downstream 651265 7998213 ~ 7999259 (+)
G139836 NA non-coding downstream 655854 8002802 ~ 8003057 (+)
G139837 NA non-coding downstream 656367 8003315 ~ 8003645 (+)
G139838 NA non-coding downstream 656956 8003904 ~ 8005450 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other upstream 240404 7066855 ~ 7073538 (+)
G139492 NA other upstream 1160822 6147748 ~ 6153120 (+)
G139176 NA other upstream 2215198 5096731 ~ 5098744 (+)
G138941 NA other upstream 3284018 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 3717834 3428689 ~ 3596108 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 29739 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 562304 7909252 ~ 7920908 (+)
G139784 NA other downstream 576234 7923182 ~ 7926832 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 690629 8037577 ~ 8044413 (+)
AMCG00002982 NA other downstream 1146057 8493005 ~ 8496965 (+)

Expression


Co-expression Network