AMCG00002945


Basic Information

Item Value
gene id AMCG00002945
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7348811 ~ 7352821 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002945
tatatctatttttcaGCATTACTTCCGTGCAGCTTGTTAGTTTTGAGATGAAAACCCACACACGTCCAACTCAGTCGTTTTTAAACAACACTGCTGCCCAACAACCTTCACTTCCTTAGTAACCCTGCCAGCGCAAGCGAAGCACACGGCCGTGCTCCTGCAGCGCAGATGAGCGCAGGCCTGCCcggatctgcgcggctccaccaatccGATCGCTTGGATTCTGCAGccctgcgcagaactgcagaaatctgcgctGCAAGAACTTGATCCATGTACGACCATGTTTGAATTTGAGTCGACGGTCCGCCGTTAGAGACGCGTTATGCCTGCAAACTCCTCGGTCACTGTGCGGTTTGGGCCGTACGAGTCCTGTGGGATTGTTGAGCACAGGACATCCCGTCTGCAAGGCCTGCAAGCTGCTCTGGCAGAGGATGGACACCAGTGCGTCCTCCAGAGGATCCCTGACTGGAACACAGTGGAGCTCATAGTGAACGGAGAGCTCGTATTTCATTGCAATATCAAAGATCTTGACTTTGGAGGTGACGGCAAATTAGACCCACTGTGCCAAGATGCTAAAACAGCAGTGAAGAAAGCTTACTGAtcactttccctttttttctggTGTAAATCTGGACATATCAGAAATGGTCCAAAACACCCCTTCTCTTATGTTGGGTTTGTCCGACAGATCTTTCATTCTGATtaaacacatctcagtttaaCACAAATGTGTTGGTCTTGTGGTAATACAGAAAGTGACAGGATATTGGAGCTATTAGAAATGTGGATCTCATCTCATTCTCAATATGccttttcctttaattgttACAAACATACAATTCTTCAACCCAGAGTAGGGTTAGGCATCCAGGCTTTCATAAAGGTTGTACTGTCTTAACTGAATTGGGTATAGATCTCTAAAGGCCTAGCTTGATTCTGGTGTTATTAGTAGCCCTATcgttataaaatatgaaattataaaatgatatgAAAGTTTATATGAAGGAAAGAACTGTTTGTTTTCAAGCCAAATACAAACTGTAGACCTGTGACTTGTACTACACATAAACttcataacaatatatatttattttactttgttctgCATCTAATTTATTCCATATTCAATATTCTAATATTCAAGTACTACTTTGCATAACAATTACTGTTTGACGGTGATAGGAAAG
>TU175710
CACCCTTGTTCAACCCAAATCAAAcaatgaaaagttattttatttaaatttcaccATCTGCCTTATTCTACTTCAGAACAGTAACCCTGCCAGCGCAAGCGAAGCACACGGCCGTGCTCCTGCAGCGCAGATGAGCGCAGGCCTGCCcggatctgcgcggctccaccaatccGATCGCTTGGATTCTGCAGccctgcgcagaactgcagaaatctgcgctGCAAGAACTTGATCCATGTACGACCATGTTTGAATTTGAGTCGACGGTCCGCCGTTAGAGACGCGTTATGCCTGCAAACTCCTCGGTCACTGTGCGGTTTGGGCCGTACGAGTCCTGTGGGATTGTTGAGCACAGGACATCCCGTCTGCAAGGCCTGCAAGCTGCTCTGGCAGAGGATGGACACCAGTGCGTCCTCCAGAGGATCCCTGACTGGAACACAGTGGAGCTCATAGTGAACGGAGAGCTCGTATTTCATTGCAATATCAAAGATCTTGACTTTGGAGGTGACGGCAAATTAGACCCACTGTGCCAAGATGCTAAAACAGCAGTGAAGAAAGCTTACTGAtcactttccctttttttctggTGTAAATCTGGACATATCAGAAATGGTCCAAAACACCCCTTCTCTTATGTTGGGTTTGTCCGACAGATCTTTCATTCTGATtaaacacatctcagtttaaCACAAATGTGTTGGTCTTGTGGTAATACAGAAAGTGACAGGATATTGGAGCTATTAGAAATGTGGATCTCATCTCATTCTCAATATGccttttcctttaattgttACAAACATACAATTCTTCAACCCAGAGTAGGGTTAGGCATCCAGGCTTTCATAAAGGTTGTACTGTCTTAACTGAATTGGGTATAGATCTCTAAAGGCCTAGCTTGATTCTGGTGTTATTAGTAGCCCTATcgttataaaatatgaaattataaaatgatatgAAAGTTTATATGAAGGAAAGAACTGTTTGTTTTCAAGCCAAATACAAACTGTAGACCTGTGACTTGTACTACACATAAACttcataacaatatatatttattttactttgttctgCATCTAATTTATTCCATATTCAATATTCTAATATTCAAGTACTACTTTGCATAACAATTACTGTTTGACGGTGATAGGAAAGGTTAAATGATGTCTAGTTCAGACTTagactgattttaaaaatattacccTGTCTTTGAATGTTTCCTCActtgacattttgtttcatgaTGTATTGTGAGAAACTGTTGCATAGCTGTTCTCCCTATAATTTTTCACCAGCATgacattttcagacattcaaagaaaaatacCACCATGATGCCTTTTGTAACTGCCATGCTTAAAAATCTTTCAATTAAACAAGACTAAAG

Function

GO:

id name namespace
GO:0040007 growth biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002945 False 1190 mRNA 0.43 3 7349043 7350768
TU175710 True 1384 TUCP 0.41 4 7348811 7352821

Neighbor

gene id symbol gene type direction distance location
AMCG00002941 NA coding downstream 150822 7189337 ~ 7197989 (-)
AMCG00002936 NA coding downstream 267188 7077934 ~ 7081623 (-)
AMCG00002934 NA coding downstream 288923 7040280 ~ 7059888 (-)
AMCG00002933 pcdh15b,LOC108273410,LOC106578947 coding downstream 592020 6743734 ~ 6756791 (-)
AMCG00002932 LOC106589399,LOC101467287,LOC102215614 coding downstream 611537 6645632 ~ 6737274 (-)
AMCG00002948 chat,LOC107588646,LOC107683741,LOC107707518,LOC108245700 coding upstream 10231 7363052 ~ 7371613 (-)
AMCG00002947 NA coding upstream 49760 7402581 ~ 7407518 (-)
AMCG00002951 NA coding upstream 81430 7434251 ~ 7446572 (-)
AMCG00002950 ghitm coding upstream 107111 7459932 ~ 7468014 (-)
AMCG00002956 fbx37,fbxl15 coding upstream 464940 7817761 ~ 7826227 (-)
G139668 NA non-coding downstream 129619 7218869 ~ 7219192 (-)
G139639 NA non-coding downstream 275275 7001665 ~ 7073536 (-)
G139593 LOC100846954,LOC107575789 non-coding downstream 838686 6482267 ~ 6510125 (-)
G139496 NA non-coding downstream 1190048 6157743 ~ 6158763 (-)
G139249 NA non-coding downstream 1952252 5396339 ~ 5396559 (-)
G139752 NA non-coding upstream 102723 7455544 ~ 7458491 (-)
G139825 NA non-coding upstream 593231 7946052 ~ 7946521 (-)
G139867 NA non-coding upstream 758204 8111025 ~ 8115245 (-)
G139881 NA non-coding upstream 828469 8181290 ~ 8181576 (-)
G139902 rps24,LOC106591086 non-coding upstream 877548 8230369 ~ 8234284 (-)
AMCG00002935 LOC106589936 other downstream 282461 7062473 ~ 7066350 (-)
G138932 NA other downstream 3346007 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 3395487 3928761 ~ 3953324 (-)
G138741 NA other downstream 4629392 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 6423413 920788 ~ 925398 (-)
AMCG00002970 cj104,anapc16 other upstream 578345 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 1132540 8485361 ~ 8494596 (-)
G140006 NA other upstream 1494211 8847032 ~ 8847840 (-)
G140015 NA other upstream 1883837 9236658 ~ 9237730 (-)
AMCG00003017 NA other upstream 2244122 9596943 ~ 9607316 (-)

Expression


Co-expression Network