AMCG00002946 (LOC108442250)


Basic Information

Item Value
gene id AMCG00002946
gene name LOC108442250
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7412109 ~ 7425081 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002946
GGTCTACCTCTGGTTTGGGGTTCTTGTCCAACTCAGTGTAGCTGCTTTTATCACAACCTCAGTGATGGATCTAAAGCAAGGAGTGTCCTTTGCAATGACCCAGAGATCTCTCTGGTTCCAGCCAACTTCCCCACCGACACCTCCAAGCTCCGTATTGAGAAGACGGCCATCAAGAGAATCCCCAGCGAAGCCTTTCATTACCTCTCCAACCTGGAGTTTCTCTGGATGTCCTTTAACTCCTTatccacactgaacatggacagTTTCCGTGGGTTGTACAGCCTTGATGAACTCAGACTAGATGGCAATGCCCTCACTTCTTTTCCTTGGGAGGCCATTGTTGACATGCCCAGCCTGCGGCTACTCGATTTGCACAACAATCAAATCACTTCAGTCCCGACTGAGGCAACGGTGTACATCAAAAACCTGACCTACCTGGATCTATCCAGTAACAACCTGGCCACCATACCTTCAGAAGTCATGGCGACGTGGCTGACGGTGAGACCCACTCAAGATGCCTACATCGAGAATTCCAAAATGATTCTAGGTCTTCATGACAACCCTTGGCTTTGTGACTGCCGCCTGTATGACCTGGTGCAGTTTCTGAAGTCTCCGTCGTCTGCAGTCGCTTTCATCGATACCAGGCTCAAGTGCTCGGACCCAGAGAGTCTCTCTGGTGTACTGTTCAGCGATGCTGAGCTGAGGAAATGCCAGATGCCAACCATTCACACTGCGGTAGCTCGGGTTCGGAGTGCTGTCGGGAACAACGTCCTGCTCCGGTGTGGGACCATTGGAGTACCAATTCCAGATCTCATGTGGAGGCGAGCAGATGGGAAACAAATGAATGGCACAGTTCAACAGGAGGTGTCAAAAGAGGGAATCACTTGGTCCATACTGAGTGTACCTGCAGTCTCCCACCGTGACTCTGGAAAATATGTTTGCAAAGCAACAAATTTTGCAGGGAGCGCTGATGCTGTCATTTCTCTCATTATAACGGACATTGTCAAGTCAGACAATCAAACTGGTAACCCAAAGAGACCCAGAGGAAGAAAGCCAAACGGAGTGGGAAAGGCAGCATATCAGGAAAAACTCGTGGCTAGGTATGTCGTTCCAACAACTACTACCCCAACACCAGACGCTGACCCGGTGGGTTATACTGGACAATATCCAGAACTGGAAAATTACAGCATCTCTGACAGTGGAACAAATGGACAAACATCCAATCCACTCAGCAGCAATGGCTTACTGGAAGGGGACAGAACAAATCTCAGCAATTTAGCAGCGAACACCTCCTCACTTCAGCAGGAGCCAGAACGTGTGGTTAGATCTGTGAAAGTGATCGGGGACACTGACCACACTGTCTCCCTGACATGGAGGGCCCCCACGGCTAAAAACACCACCATGTTTAGTGTCCTGTATGCGAtctttggagagagagaaatgcgcAGAATTAACGTTGATCCGGGCAAGAACAGGATCACCATCGAGGGACTGATGCCAAAGACAAAGTACATTGCCTGCGTGTGCGTCAAAGGACTGATCCCCAAAAAAGAGCAGTGTGTAATCTTCTCAACAGATGAGGCCGCCAGCGCTAATGGAACCCAAAAGCTCATTAATGTTGTTGTAATCACTGTTGCCTGTGTAATTGCTGTCCCCCTGACACTGATAGTCTGTTGTGGGGCACTGAAAAGGCGCTGCAAGAAACTGCTTGGGAGAAAGTCAAAAGACATCCAAGACTCTTATGTCACATTTGAAACTCTGTCCCCAGGGCCAAAAGCAAAGGGTCTAGAGGGAGAATACCTGACCAGGCTCAATCCAGAAGAGTCTAACCGACTCCTCTCAGCCAGATCAAGTGTAGACTCAGAAGCCACAGCTAAGATTGAAGGACAGCCAAATGAaaatgacagttttgggagATCTTTACTTTGCATGGCCACCGCCCTAAGAAGAATCCCTGAAAACATCCCGCAAGATTTCAGAAAAATCCGAATTGAAAAATGTCACCTTACAGAGTTACCCCGTGGGTCGTTTTCTACGATTAGTGCCTTGGAATATCTCTGgcttaattttaacaatataacTGTTATGAATATAAGGAGCCTTGAGGGATTAAAGAACTTGACTGAGCTAAGACTGCAGGGGAACAATTTGCGTTCAGTACCCTGGACAGCGTTTCAGGATACATCTGTGCTAAAAATCTTGGATTTGAAACACAACCGACTAGACGTGCTCCCAGAATACGCACTAAGACATTTGCCAGGCCTGACCTACTTAGACTTATCCTTCAATCAGCTTACAGTTATATCCAAAGATGTCTTTCTGAACTGGCCTCTCtaccacacagcacagcaacagGGAGGAAAACAGGAGCGCTTGGCAAACGTTGTCCTCGCTCTGCATGACAATCCGTGGATTTGTGACTGTCGTCTGAAAGGCTTTGTTCAGTTCATTAGATCTGTTACCCCAcctatcattttaatgaattctTACTTGACCTGCTCAGGCCCAAAATTCAGGGCAGGCAAGTTTTTTCACGAAGTTGAATTGAATAGTTGCATGAAGCCAGAGGCCACTGCCCCCAATACAAACCTTACACTGCCATTGGGGGTGAACATTTCTCTTACATGCTTGGCTAAGGCAAGGCCGGACCCTGCAGTGTGGTGGACATATGGTCTGAAGATTGTAAGAGGATTCAATGAGACAAGAACACGGATTAATGAAGATACCATCAAGTCTGAACTGACGATCCCGTCATTAAGTCTACTGGACAGAGGGACATACACCTGTATTGCCACTAATTTTATTGGGAACTCCAATGTCACCATATTTGTAAACGTCACTGCCCCGAATACATCATTTGCACTTTCTCCATTATATCCTTTATCGTCATCGTCAGTGGAAGAGAACATTTACATAGACATCCGTATTGCCAAACAGACAGTCTATGGGATCACTCTTGAATGGTACGCCGCCACAGAAAACCCAGCGGAAAGCTGGTACACCATACACTTCGGCAAATACGACAATGccagaaaagaaacaatctatATAGGCCCAGGAATCAACAGCTATTCGGTCACAGATTTGCTGCCAGCTACAAAGTACGAAGTGtgcattactttaaaaaatcaGCCTCCCAGAAGAGGtcaatgtgttgtgtttgtgacCGGCAGTGACATCAGTGAACTTGAGCAGAGAGAAAAGCTGATTCACATCGTGGTTATTGTGTGTGCCATGGTGCTGGCAGTGCCCGCAGGAATGTATGCATGCACCACAGAAACCAAGTTCAGCTGCTTTGAACGATGCAGTGAAATATGCAAAAGGCGGCGGCTTGCAGAGAAGACCCTCAAATCCAGCGAAAGACAGGGCACATTTGATAGTTTACAAGCAGCGAGTGATGAAGGGCTCTGTAGAGACTCTAGTGATGAcaaaagaagaaggaggaggtcAGAGGACAAAACACAGAAGGCCAGAGCTGAACAAAGGAACAATGCAGAGCTGTAC

Function

NR:

description
PREDICTED: leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1

GO: NA

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002946 True 3504 mRNA 0.47 7 7412109 7425081

Neighbor

gene id symbol gene type direction distance location
AMCG00002942 ogdhl,LOC107707496,LOC107683740 coding upstream 65161 7313942 ~ 7346948 (+)
AMCG00002944 NA coding upstream 101185 7271927 ~ 7310924 (+)
AMCG00002943 NA coding upstream 144231 7225789 ~ 7267878 (+)
AMCG00002940 phyhiplb,phyhipl,LOC107654056,LOC107746456,LOC107695536,LOC107727060 coding upstream 222304 7166518 ~ 7189805 (+)
AMCG00002937 bicc1,bicc1b,LOC107653928,LOC107695510,LOC107596591 coding upstream 259945 7132176 ~ 7152164 (+)
AMCG00002949 NA coding downstream 64290 7489371 ~ 7500590 (+)
AMCG00002952 pax2a,pax2 coding downstream 270278 7695359 ~ 7733537 (+)
AMCG00002955 NA coding downstream 387428 7812509 ~ 7821463 (+)
AMCG00002959 NA coding downstream 403010 7828091 ~ 7829718 (+)
AMCG00002953 ndufb8,LOC102781364,LOC106577308 coding downstream 418463 7843544 ~ 7845870 (+)
G139667 NA non-coding upstream 215012 7196878 ~ 7197097 (+)
G139656 NA non-coding upstream 259370 7152537 ~ 7152739 (+)
G139633 NA non-coding upstream 345735 7062523 ~ 7066374 (+)
G139572 a1cf,LOC107708930,LOC107695528,LOC107654048,LOC107739758 non-coding upstream 988941 6420166 ~ 6423168 (+)
G139573 NA non-coding upstream 993311 6418438 ~ 6418798 (+)
G139827 NA non-coding downstream 528045 7953126 ~ 7953340 (+)
G139832 NA non-coding downstream 573132 7998213 ~ 7999259 (+)
G139836 NA non-coding downstream 577721 8002802 ~ 8003057 (+)
G139837 NA non-coding downstream 578234 8003315 ~ 8003645 (+)
G139838 NA non-coding downstream 578823 8003904 ~ 8005450 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 32622 7376687 ~ 7379487 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other upstream 338571 7066855 ~ 7073538 (+)
G139492 NA other upstream 1258989 6147748 ~ 6153120 (+)
G139176 NA other upstream 2313365 5096731 ~ 5098744 (+)
G138941 NA other upstream 3382185 4029524 ~ 4029924 (+)
AMCG00002960 NA other downstream 484171 7909252 ~ 7920908 (+)
G139784 NA other downstream 498101 7923182 ~ 7926832 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 612496 8037577 ~ 8044413 (+)
AMCG00002982 NA other downstream 1067924 8493005 ~ 8496965 (+)
AMCG00002996 NA other downstream 1811659 9236740 ~ 9244099 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006050 lrit1a coding NC_007124.7 CM002897.2 29462249 ~ 29467558 (+)
grasscarp (Ctenopharyngodon idella) CI01000012_09789066_09792437 LRIT1A coding CI01000012 null 9787695 ~ 9792437 (-)