AMCG00002947


Basic Information

Item Value
gene id AMCG00002947
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7402581 ~ 7407518 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002947
AGAAAGGGGGAGCGAGAGGAGAGCTGCTGTATTCAGTAAGACATTCCTTTTGGGATTGAAGCAAAATGGGGAATAAAAAAGGCTTTACATAACTTGCATGCTTTTTCACATGAAAGGGGCCTTTAAAAGGAGTCTGCTTTGGATTCTGTCAGGACACAAGGAGCAAGAAGAAAGTGGGCTAGTGGGGTTGTGATTTTGTGTATGGTAGTGTTAACAACGCATCTTGAACATGGTCACTTCGTACACTTTACCGGAGGGATTCACTGATTTGGATGTGTTCGGATTAGGCACAGCTCTTCTTGTTGAGGgTCTCATGGGATTTCTTCTCAACGGACTTACAATTCTGTCtttctacaaaataaaagaattaaGAACTCCCAgtaattttcttgttttcagccTTGCTCTTGCCGATTTGGGGATTTGTATGAACGCTACCATTGCAGCGTTCTCCAGCTTTTTGAGATACTGGCCTTACGGCTCAGAAGGCTGCCAGACCCATGGTTTCCAAGGCTTTTTGACGGCTCTTGCCAGTATCACCTTAATGGCATCCATTGCCTGGGACAGATACCACCAGTACTGCACTAGAACAAAGTTACAGTGGAGTACTTCAATTACTCTCGTTGTCTTCATGTGGTTATTTTCTGCGTTCTGGTCGGCCATGCCTCTGATGGGATGGGGTGAATATGACTACGAACCTCTGAGAACATGCTGCACATTGGACTACACCAAGGGAGACAGAAACTTTATCTCCTACTTGGTGCCCATGGCATTTTTCAACTTTGTAGTCCCATTTTTAATCATGTTTACATCTTATCAATCAGTGGAAAAGAAGTTCAAGAAAACTGGACAATTTAAGtttaatactGGTCTACCTGTGAAAACTCTGTTGATGTGCTGGGGTCCCTATTCAGTTCTCTGCGTGTATGCTGCTATTGAAAATGCCACAGCCGTGTCTCCTAAATTGAGAATGattccTGCTATTTTGGCAAAGACCTCACCAACCATCAATGCTTTCTTGTATGCCCTGGGAAATGAAAACTACAGAGGAGGGATCTGGCAGTTTCTCACTGGACAGAAAATTGAAGTGCCTCAACCTGataacaagacaaaataaacacaatattcaTTAATAACCTTTTATGTCCTGGTGGTCCCTAAAAAGGGATGTAACAGGTATAGCCTTAACCAGAACATGAACACATTTTcagcattatatacatatatttatataatactgCGTACATTGTATAATTTCAGAAGAGTTTAATCCTATATATAACTGGTCATTTCAGTTGGTTCCACATTGGAAAAATGTGCTGTGTATGAGCTGGAAAAGAAGTCGGAGAAGTCGGAGAAGTAAAGAAGTCGGAGAAGTAATGTCAATCTCAAAGCTATTGCAAGGACATTTTCTATTAGCGTTCATATTGACTTGGCTGTCTGTAGAAGTCAATATCAGTGCTAACAGTGAAATGGAGTCTGTGAACTTTCTTCACAAGAggccatttgttttttataacatGTTGAGTTTGAGGTTTTATTGCTATATTAAACAACCATTAAGGTCCATATTCTTGCCATGGACttcaaaatgtatcaaataaatagttaaacaaTGTTGGGTTGAAgatctttccatttaaaaatgtttgaaaaatatatttcaatattggAGTCTGTTCTGTCCCGTCAAATAGTGACACCTAACTACACCTAACAtacaaattaatcttttttttctctttcatcctgtggaaatctgtttttgtattacagtttgtttacaaagaaaacaacttgTACttctttatatttacatttagc

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG:

id description
K04254 RGR; retinal G protein coupled receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002947 True 1824 mRNA 0.39 7 7402581 7407518

Neighbor

gene id symbol gene type direction distance location
AMCG00002948 chat,LOC107588646,LOC107683741,LOC107707518,LOC108245700 coding downstream 30968 7363052 ~ 7371613 (-)
AMCG00002941 NA coding downstream 204592 7189337 ~ 7197989 (-)
AMCG00002936 NA coding downstream 320958 7077934 ~ 7081623 (-)
AMCG00002934 NA coding downstream 342693 7040280 ~ 7059888 (-)
AMCG00002933 pcdh15b,LOC108273410,LOC106578947 coding downstream 645790 6743734 ~ 6756791 (-)
AMCG00002951 NA coding upstream 26733 7434251 ~ 7446572 (-)
AMCG00002950 ghitm coding upstream 52414 7459932 ~ 7468014 (-)
AMCG00002956 fbx37,fbxl15 coding upstream 410243 7817761 ~ 7826227 (-)
AMCG00002958 hif1an,fih1,LOC106577208 coding upstream 425573 7833091 ~ 7843208 (-)
AMCG00002957 wnt8b,LOC103355142,LOC102196387 coding upstream 462083 7869601 ~ 7873602 (-)
G139668 NA non-coding downstream 183389 7218869 ~ 7219192 (-)
G139639 NA non-coding downstream 329045 7001665 ~ 7073536 (-)
G139593 LOC100846954,LOC107575789 non-coding downstream 892456 6482267 ~ 6510125 (-)
G139496 NA non-coding downstream 1243818 6157743 ~ 6158763 (-)
G139249 NA non-coding downstream 2006022 5396339 ~ 5396559 (-)
G139752 NA non-coding upstream 48026 7455544 ~ 7458491 (-)
G139825 NA non-coding upstream 538534 7946052 ~ 7946521 (-)
G139867 NA non-coding upstream 703507 8111025 ~ 8115245 (-)
G139881 NA non-coding upstream 773772 8181290 ~ 8181576 (-)
G139902 rps24,LOC106591086 non-coding upstream 822851 8230369 ~ 8234284 (-)
AMCG00002945 NA other downstream 49760 7348811 ~ 7352821 (-)
AMCG00002935 LOC106589936 other downstream 336231 7062473 ~ 7066350 (-)
G138932 NA other downstream 3399777 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 3449257 3928761 ~ 3953324 (-)
G138741 NA other downstream 4683162 2718208 ~ 2719419 (-)
AMCG00002970 cj104,anapc16 other upstream 523648 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 1077843 8485361 ~ 8494596 (-)
G140006 NA other upstream 1439514 8847032 ~ 8847840 (-)
G140015 NA other upstream 1829140 9236658 ~ 9237730 (-)
AMCG00003017 NA other upstream 2189425 9596943 ~ 9607316 (-)

Expression


Co-expression Network