AMCG00002950 (ghitm)


Basic Information

Item Value
gene id AMCG00002950
gene name ghitm
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7459932 ~ 7468014 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002950
CGTAAATACGTCAAATCCCACAATGCAACGCGTTGCTGTCGACTAGATATGACGTAGTCACTAGGAACTTTCAGGAAGGTTTGCTCTGGGTTACATCAGGTGCAGATAGTTTATACCGCACGACGTACAGCACTTATCAGCATCAGACATTAAGATTTGTCTTCCTGTACCTGAACACAATGCTGGTGGCAAGGCTAGCATGTCTGCGCAGTTTGTCCAGCGCTGGGCTCCGCTCTGCGCTGGTCCAGGTGTCTCCAACACTGAGGAACTCGAGTATGAAGATAGGTCAACCACTACTGAAGCCCAACCAAGGATATTCAACAAAGGCCAGATTTGCATTACGGCGAAGCAAGTCTGCTAAAGACCAGATCAAAGAGGCAGCTTTTGAACCAGCAACAGAAACTGCAATTAAAGTTGACAACATGGGAAGAATAATTCTTGCTGGTGGGGCTGCTGTAGGCCTTGGAGCTTTGTGCTACTATGGACTTGGGATGTCAAATGAAATAGGTGCCCTTGAAAAATCAGTCATCTGGCCTCAGTATGTTAAAGACAGAATCCACTCTACATACATGTACCTGGCTGGGACTGTGGGGCTCACAGCTTTATCTGCCGTTGCTGTCAGCAGAACTCCTGCACTCTTGAATCTGATGATGAGGGGCTCCTGGCTGGCTATGGGTGCAACATTTGCTGCCATGATAGGAGCAGGGATGTTAGTCAGATCAATCTCTTATGACGAGAGCCCAGGTCCCAAACACCTTGCCTGGATGATGTATGCagGTGTGATGGGTGCAGTTGTGGCCCCGCTGACACTCCTGGGAGGCCCTCTGATCATGCGTGCCGCCTGGTACACTGCCGGCATCGTGGGGGGGCTGTCCACTGTAGCGGTGTGTGCACCCAGTGAGAAATTCCTCAACATGGGGGGTCCCCTGGCGGTGGGCCTGGGTGTGGTGTTCGCTTCCTCCATCGGCTCCATGTTCCTGCCTCCTACTTCAGCCTTTGGCGCAGGTCTCTACTCTGTGGCAATATATGGTGGCCTGATCCTTTTCAGCATGTTCCTGCTATACGACACCCAAAAAGTGATCAAACGTGCTGAATCTTACCCCATCTACGGAGTTCAGAAATACGATCCCATTAATTCATGCATGGGAATTTACATGGACACTCTGAATATCTTCATTCGAATGGTGACAATTCTGGCTAATGGAGGCAACCGAAGAAAATGAGAATCTTTCACCTGTTTTCTGGACTGTTTGGTCTTTCTGCATAATTTGCCATGAGCTTTAATATCTAAAACTGGTGGACTAAATGCCTACAATTGGAGGACCGAATACAAATGTCAAAgttcaaatatttaacatataaaTTGAAGTAGTTTTTTTGAAGCGTGCATTATTATTCCTTTTCCACGCGGTGTGAATTGATacgtaaaataaacattacattacttcgaagaaaaactatacatttccatttgctTTGGTTAACATGATAGTTATGAGAAGTTTAAATGATGAGGCATATATTTCTGTTACTTATTTCTTGGGATGATACattgttaaacaaatgtttatgtattttgaaatatttatattttatcagtctcttatgtttaaattaaacacctgaagagttgatttaaaatgttaattccaGTGGCATTTCTGTCTTTCACTTCTGCAATATAGAATTACCTTCAACATGAATAGTTTGTTAGCTTGGTAAAACATCATTTGTAAAGTTACGGCCCATTAAAGGAATGCACTTCagcaagtgtttttttgtttgtttatgtggtCAACCCcaatgttttcattcattttaaatgttacccATTCATGTATTTGTGGGTTGGGCTTTATTTATCGAAATGGAACAAAAAGGTTTATAATCTTTAAAAAGGGACAACGCTACCATTCTCAATTGTTAATAGACTATATAAGGTCTGGCCTTGTTCTGTTATGCTAACACTGACAAAGAAGGGTAAAGGTTCAAGGTAATTGATCCacataatacttttttcctttttcttttctttccagtcCACTGCAGTTCTTGTATAGGTATTGTAAACGCTGCTTTATCAGAATCTGGCGTGGTAGGTTGTGTATGttatagacacacacattcactatTCTCATTACAAATGTACTAATGTGTGAAATTACgttaaaatattc

Function

symbol description
ghitm Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GHITM (growth hormone inducible transmembrane protein).

NR:

description
PREDICTED: growth hormone-inducible transmembrane protein

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K21890 GHITM, DERP2, TMBIM5; growth hormone-inducible transmembrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002950 True 2177 mRNA 0.42 9 7459932 7468014

Neighbor

gene id symbol gene type direction distance location
AMCG00002951 NA coding downstream 13360 7434251 ~ 7446572 (-)
AMCG00002947 NA coding downstream 52414 7402581 ~ 7407518 (-)
AMCG00002948 chat,LOC107588646,LOC107683741,LOC107707518,LOC108245700 coding downstream 88319 7363052 ~ 7371613 (-)
AMCG00002941 NA coding downstream 261943 7189337 ~ 7197989 (-)
AMCG00002936 NA coding downstream 378309 7077934 ~ 7081623 (-)
AMCG00002956 fbx37,fbxl15 coding upstream 349747 7817761 ~ 7826227 (-)
AMCG00002958 hif1an,fih1,LOC106577208 coding upstream 365077 7833091 ~ 7843208 (-)
AMCG00002957 wnt8b,LOC103355142,LOC102196387 coding upstream 401587 7869601 ~ 7873602 (-)
AMCG00002963 scd,LOC107659656,LOC103362465,LOC107715223,LOC108246230 coding upstream 427339 7895353 ~ 7901361 (-)
AMCG00002964 NA coding upstream 441535 7909549 ~ 7910955 (-)
G139752 NA non-coding downstream 1441 7455544 ~ 7458491 (-)
G139668 NA non-coding downstream 240740 7218869 ~ 7219192 (-)
G139639 NA non-coding downstream 386396 7001665 ~ 7073536 (-)
G139593 LOC100846954,LOC107575789 non-coding downstream 949807 6482267 ~ 6510125 (-)
G139496 NA non-coding downstream 1301169 6157743 ~ 6158763 (-)
G139825 NA non-coding upstream 478038 7946052 ~ 7946521 (-)
G139867 NA non-coding upstream 643011 8111025 ~ 8115245 (-)
G139881 NA non-coding upstream 713276 8181290 ~ 8181576 (-)
G139902 rps24,LOC106591086 non-coding upstream 762355 8230369 ~ 8234284 (-)
G139937 NA non-coding upstream 1026840 8494854 ~ 8495297 (-)
AMCG00002945 NA other downstream 107111 7348811 ~ 7352821 (-)
AMCG00002935 LOC106589936 other downstream 393582 7062473 ~ 7066350 (-)
G138932 NA other downstream 3457128 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 3506608 3928761 ~ 3953324 (-)
G138741 NA other downstream 4740513 2718208 ~ 2719419 (-)
AMCG00002970 cj104,anapc16 other upstream 463152 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 1017347 8485361 ~ 8494596 (-)
G140006 NA other upstream 1379018 8847032 ~ 8847840 (-)
G140015 NA other upstream 1768644 9236658 ~ 9237730 (-)
AMCG00003017 NA other upstream 2128929 9596943 ~ 9607316 (-)

Expression


Co-expression Network