AMCG00002951


Basic Information

Item Value
gene id AMCG00002951
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7434251 ~ 7446572 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002951
TTGAGGCAGACTATGCACCTTATTTTTATGATAATGGACCCAACAGTGGAAATGGCAACATGGCATTGCTGAATCTATCTGAAGACACTCCAGTTGGAACACAGATATACATCCTTAATGGCACGGATCCAGAAGGGGATCCTGTAACATTTGGTTTAGCGTTCGAAGCAGGATCTAAGGAATATTTTAAGGTGGATCCAAAAACTGGAAATATAACACTTGTACAAGAACTCGACAGAGAAaagCAAGATGAAGTCGAAGTTCTTGTCAGTATTTCTGATGGCCTTAATAAAGTGGTTGAGAAAGTGAGGGTGTTGATAACTGATGCCAATGATGAAAGTCCGGAGTTTGGAAACGTGTCTTTCATTGTGAATGTTCCAGAGGACACACCCTCCGGAAGCAGCATATTTAAACTCCAGGCTGTGGACAAGGACATTGGGTCAGGAGGCAGCGTCACCTACTATCTTCAGAACCCTCGTCTAAACAAGTTTGCCATCGACAGACACAGCGGTGTGCTGCGCATCAAACCTGGGGAGGCGCTGGATTATGAGAAGTCTAGGACTCACTTCATCACAGTCGTAGCCAAGGATGGTGGTGGGAAATACAAGGGCAAGTACCAGGTGTTGTCATCTTCAGCCACAGTGACGATCAATGTGATCGATGTTCAAGACACCCCTCCTTCGTTTGTTGGAACTCCCTATTATGGTTATGTTTATGAAGACACAGTACCGGGTTCTGAGATATTTACTGTGGTTGCCCAGGATGGAGACAGAGGCAACCCTAATATTATCCTTTACTCCATCATTAATGGTAAGAAACACATAAGTCTCATAACCAAGAAGGAAACCATCCTTTGTAATCTCAGGATGACAGAATCTTTAACTAGCAATGCAGGAGTAAGAAGCGAAGGGCTTTTCactgtaaacaatacaagtggCTCGATTAGTCTTCTTGATTATCCCATCCAACTTAAGAAGGAGATGTATGAACTTAGAATACAGGCTTCAGAAGTCAGCCCTGAGGGGGACGTGGTTGCCCATATCACTACAACTGTGACGATTCGAGTTGTGGACTTGAACAACCACCCCCCTACTTTCTATGGAGAAAATGGACTTCAGAACAAATTTGAACTTACAATGTATGAACATCCACCCGAAGGCGAAATACTGAGGGGGTTAAAAATAACAGTCAATGACTCAGATCAGGGGGCCAATGCTAAATTTAACCTGAGGCTTGTGGGTCCAGGCCGTATGTTCAGAGTTGTCCCTCAGACAGTGCTCAATGAAGCACAAGTGACAATAATAGTGGAAAATTCTGCTGCAATAGATTATGAGAAATATCAGGTCTTAACATTCAAGCTCCTTGCTGTGGAAATCGACACACCTGAGAAATTCAGCTCGACGGCAGATATCGTGATTCACCTCCTAGACACCAACGACAACACTCCCAAATTCTCCTCTGACTACTACATCGCCAGGATCCCAGAAAACTCCCCCGGGGGGTCCAATGTTGTCTCTGTCACGGCTACAGATCCCGATTCTGGCCTCTGGGGCGAGATCAAATACTCCATCTATGGGACAGGCTCTGATTTGTTTCTCATTCATCCAACAACAGGAATTATATATACTCAGCCATGGGCCAGCCTAGACGCAGAGATGAAATCGAAATACAATTTTTATGTGAAGGCAGAGGACACTGAGGGGAAGTACAGCCTGGCTGAGGTCTTTGTCACTGTTTTGGACATGAATGACCACTCCCCTGAATTTAATGAGAACTTCCTGGAGAAGACCATGATTATTGGTGCGCCCGTGAAAGTAGAGgCAATCGATGATGATGCAGAGGAGCCAAATAATGTTATCGAGTACTCCATAATGCAAGCAGATCCGGATAACATATTTgacataaacacagacactgggGAAATCAAGCTGAAGTCCTACATTAAATCAATGGAAATAGTCCAGAACATTACGAAACAGAAAGACTGCAAGTGGTCGGTGGTGGTCCAGGCTAAAGACAGGGGCTCTCCTTCCTTCAGCACCACCGCAGTGGTGAAGATCGACATCACAGAAGCGACTCAGCTCAAGGGGCCTATGGCGGCCTTTTTAATGCAAAGTAGGGAAAATCCCATGAAAGCCCTAGGTGTGCTTGCTGGTGTCATTTGCATTATGGTAATCATAACAGTCTTGATCTCCACGGCTATGTTCTTGCGCAACAAAAAATCTAACAGGATCACGCCAGCCCGTCGCATCATCAAGAGGAAGCCCAAAGACCATCAGTCCCGGCCGGACCGCAGCGGCTGGCTCCGACTCAATCGGGGAGAGAAGTTTGTGGTTGAAGAGCAAGGGAGCAATGTGGAGAATCTAAACctcaacaacaacatacaacacTGCCCTCTGCCCCCCAGTGCCCCAGCgttgcccccacccccccagtaTATTCCAAGGCCCAGTGTGAAGGAGTGGACTGTGCCTACAGTTTCAGGATCAGTGGCATCCAAATCTGCCAAAAAGCCCGTTGGTAACAAGGAACCGAACGTCAGCTCTGCACTGGTGTCAGAGCTAAAGatgaagctggagaagaaaatgATAGAAAGCAACGCACACCGCTAT

Function

GO: NA

KEGG:

id description
K16501 CDHR1, PCDH21; cadherin-related family member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002951 True 2612 mRNA 0.46 16 7434251 7446572

Neighbor

gene id symbol gene type direction distance location
AMCG00002947 NA coding downstream 26733 7402581 ~ 7407518 (-)
AMCG00002948 chat,LOC107588646,LOC107683741,LOC107707518,LOC108245700 coding downstream 62638 7363052 ~ 7371613 (-)
AMCG00002941 NA coding downstream 236262 7189337 ~ 7197989 (-)
AMCG00002936 NA coding downstream 352628 7077934 ~ 7081623 (-)
AMCG00002934 NA coding downstream 374363 7040280 ~ 7059888 (-)
AMCG00002950 ghitm coding upstream 13360 7459932 ~ 7468014 (-)
AMCG00002956 fbx37,fbxl15 coding upstream 371189 7817761 ~ 7826227 (-)
AMCG00002958 hif1an,fih1,LOC106577208 coding upstream 386519 7833091 ~ 7843208 (-)
AMCG00002957 wnt8b,LOC103355142,LOC102196387 coding upstream 423029 7869601 ~ 7873602 (-)
AMCG00002963 scd,LOC107659656,LOC103362465,LOC107715223,LOC108246230 coding upstream 448781 7895353 ~ 7901361 (-)
G139668 NA non-coding downstream 215059 7218869 ~ 7219192 (-)
G139639 NA non-coding downstream 360715 7001665 ~ 7073536 (-)
G139593 LOC100846954,LOC107575789 non-coding downstream 924126 6482267 ~ 6510125 (-)
G139496 NA non-coding downstream 1275488 6157743 ~ 6158763 (-)
G139249 NA non-coding downstream 2037692 5396339 ~ 5396559 (-)
G139752 NA non-coding upstream 8972 7455544 ~ 7458491 (-)
G139825 NA non-coding upstream 499480 7946052 ~ 7946521 (-)
G139867 NA non-coding upstream 664453 8111025 ~ 8115245 (-)
G139881 NA non-coding upstream 734718 8181290 ~ 8181576 (-)
G139902 rps24,LOC106591086 non-coding upstream 783797 8230369 ~ 8234284 (-)
AMCG00002945 NA other downstream 81430 7348811 ~ 7352821 (-)
AMCG00002935 LOC106589936 other downstream 367901 7062473 ~ 7066350 (-)
G138932 NA other downstream 3431447 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 3480927 3928761 ~ 3953324 (-)
G138741 NA other downstream 4714832 2718208 ~ 2719419 (-)
AMCG00002970 cj104,anapc16 other upstream 484594 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 1038789 8485361 ~ 8494596 (-)
G140006 NA other upstream 1400460 8847032 ~ 8847840 (-)
G140015 NA other upstream 1790086 9236658 ~ 9237730 (-)
AMCG00003017 NA other upstream 2150371 9596943 ~ 9607316 (-)

Expression


Co-expression Network