AMCG00002955


Basic Information

Item Value
gene id AMCG00002955
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7812509 ~ 7821463 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002955
TGACGTCAGACGTTTTAAACCTGGGTGACGCGGGCTGGAGCTGTCTTGTAAACAGTGTCTCTGCTGCTGGGGACACATTGACTGCACGCATTGTATTTGTTCGCGATTTGGGTTTATGTAACGCCTGCTCTTGGATGAAAGgtCTTTGGAACATAATggaacacaataaaataattcaagatGCCTTGTATGAGTTTATCCGATTGCACATCCCTAACCCCGACCTAAGTACGCTGGACGAAGTCATCCTCTCGTACATCACTGGCGTGCTGGAAGACCTGGGGTCACAGGAGAGCGTGGAGGAGAACTTTGACGTGGAGGTGTTTGTAGAAATGTTGGAAGCCTACATTCCTGGCTGTGCTGAAATCGATAGTGTCGAAGTGTGTGAGATGATGTTTAACCTGGCAGCAAGACTAGCCACAGCCCGGAACACAGAAAACAGCGCCCCAAAACCTGCAGGAggggcctcctcctcctcggacACTAGTGCTGCCAGCGCTGGGGGGGCATTGAGCAAGAAGCAGGACTTCTCGGTGCAGCTAGAGGGAGCCACGGCCAAGGAAGTTACGAACGATGGAGACAGTAAGGTGCAGCTGCTCCTGGAGATGTTCCCGAAGTGCAGCGTGACTGAAGCCAATAGCGCGCTCTCCATAGCCAAGTGGGACATGGAGGAGGCCGTGCGGCTCATCGTAGAGGGAGACCTGCAGCTCAGCCAGACCCCTCCTCTCAAGGTTAACCATGGGAAAACCTCACCTGCACAACCAGATGAAAAGCTGAAAGCAAGCATTCTTGAGAAATACATGTTAGTGGACAGTGAAGAAGATAAGAAAATTCACAGGCCAGTTACACCTAAGGAGGCGCCAAAGAAGATGGTTCGATACCTTGGCAGCCAAGTGGTGAGCACCAAGGGGGAGCGATACCAGCAGGTCAAGAAGGAAGAGAGCGAGGAAATGAAGAAAACCTACATCAGCCTCAAGCCGGCAAGGAAATATCGATTCCATTGACGGCACCTTCACCACGGCCGGCCTGCTCTCCCACAGACAGTGTGCACTTCGTCTGGGGTACTGGAGAGAACGGCAGCTGCTTTTGTGGTGGGCCACCGGTCATGAGCAGCAGCCTGTTTTCGTTGAGTGGTGTTCAGCTCTGTGTGTTTTNNNNNNNNNNccccccccccccccgagtcCAGAACGAAACTCCTACATTTTCTCCCTGTCCTCCACTAGGCAGATCTGGGGCAGGTTTACtcagatcattttttttttttttggcaattttACCATTTTTACTAAAATCAGTTGTCATGGGGGATGTTTTTAGTAGGaggtacagtacatacagatTATATTTCTACTCGTAAAgcaaaatggttttaattctgttttacaGTTCAAATTTGTTCCTCTTCTCTTTTGCACTGAAGGttgtagatttaaaaaaacaaaaaaaaactgtaattgtgATTATTAACCACTAGATGTCCCCACTACAGTATTAATCTTGTTTAATAGCTGTCCTTTCTGGGGTAAAGAATTTTTACAGTTAAAGCTATAATTTCGATATACCTTTTCTAATCATTATTTCACAGTCGATCATCTCATTTTGGTATTTTGGTGATTTGATCGAAGTTTGTGGTTTCCTACTGATACATTTCTACTGAGTAGAAGTTTTGGACACACTTGAAGGCCGTTATTAGCAACTGAAAAGTCCAAAGTGTGTAATACTCTGAATTACTCACTGGGGGTCCATTTTCAGGGAAGGACATGCCTTTTAATGCAGACATGCACACGTCTTTTAAAATCAGACAATGTGTTGtctctatttttatattaagaGTAATAAGATTATAGATTTTGAGTGTTAACTGCTTATTTAAAGGATTGTGCATGTCACGGTTGGAAGGCAGGGCTATAGGTTTTCAGGTCTCGTACCCTATAGCTCTGGTGTGTGCACTCAAATGCCAGCAAAATCACTGCATTTCCCAGATCTACACATTAGTAGTTGGCAGCTATTAAATAGGCACAATCAAAGTGAGTGTTGTTTACCTTAACACTGTTCTTAAGGATTCGATTGACCTACTGATAATTCAGTCTCATGAAATCCATAACAGATCCGGTGCTCCTTCAGTGATAGCACAATTAAAGCaaatctttaatatatatttatgttttagttaattcaagtgctttcattttattgtatttttattttcatgggtTGCCTGTTCATGCTTTTTCATATAACTTGacactgtatatttatagttttgAATCTCAGTAACCAAAATTACCTTGTAGGTTTTACCAATGCTGTGGGCTGAAGAGATCAGCACAATTTAATAACTGTACATCAAAGtgcacatcattttcattcatgCTGCATGAATCAGTCGTTAGTTTGATATAGGCCTAGATAGTTATTTTCATCGCTTTGATTAATACTGGAATTTGTTTATAAGTGTTCAATGGCAATTGACTGctataacataaaacattaatcttgtttatatatacacaaatataaataaactccATTACTTCcaatcatttcaatttaaatatacacactgGTAACATACCAGGGATTCAGCACGTATTGAGCTACaacatgcttttcattttcgtaaaatatgaaatagaaCAAAACGGTTGCAGTTCTTTGTTGTAACTATATGTATGCTTGCCATTGTTCTGCTCTGTGCCTCACAGATTAGACAAAAGTGCTTTTTTCAGCAACAGCTGTACATTCATTTTAGGTTTCAGATTTAGTTGCAAATACGGTGCACTGTTATATTACCATTACTAACTCCATGTGTTGCATATGACCCTCCGTTTATGGCTGAATATGCTTACAAtgattttgtaaatgttcattttgtattctcaatttagtttttatctgTGGTATTTATGTAAACACAATGCAATTGTCTTTTAtactaaatatacatattgttgttgAGTAGCAACATAGTAATGTATAAAATACCTAGTGTTATA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002955 True 2996 mRNA 0.41 9 7812509 7821463

Neighbor

gene id symbol gene type direction distance location
AMCG00002952 pax2a,pax2 coding upstream 78972 7695359 ~ 7733537 (+)
AMCG00002949 NA coding upstream 311919 7489371 ~ 7500590 (+)
AMCG00002946 LOC108442250 coding upstream 387428 7412109 ~ 7425081 (+)
AMCG00002942 ogdhl,LOC107707496,LOC107683740 coding upstream 465561 7313942 ~ 7346948 (+)
AMCG00002944 NA coding upstream 501585 7271927 ~ 7310924 (+)
AMCG00002959 NA coding downstream 6628 7828091 ~ 7829718 (+)
AMCG00002953 ndufb8,LOC102781364,LOC106577308 coding downstream 22081 7843544 ~ 7845870 (+)
AMCG00002954 NA coding downstream 26515 7847978 ~ 7863421 (+)
AMCG00002961 NA coding downstream 116969 7938432 ~ 7946524 (+)
AMCG00002966 spock2,LOC108443083 coding downstream 133753 7955216 ~ 7998025 (+)
G139667 NA non-coding upstream 615412 7196878 ~ 7197097 (+)
G139656 NA non-coding upstream 659770 7152537 ~ 7152739 (+)
G139633 NA non-coding upstream 746135 7062523 ~ 7066374 (+)
G139572 a1cf,LOC107708930,LOC107695528,LOC107654048,LOC107739758 non-coding upstream 1389341 6420166 ~ 6423168 (+)
G139573 NA non-coding upstream 1393711 6418438 ~ 6418798 (+)
G139827 NA non-coding downstream 131663 7953126 ~ 7953340 (+)
G139832 NA non-coding downstream 176750 7998213 ~ 7999259 (+)
G139836 NA non-coding downstream 181339 8002802 ~ 8003057 (+)
G139837 NA non-coding downstream 181852 8003315 ~ 8003645 (+)
G139838 NA non-coding downstream 182441 8003904 ~ 8005450 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 433022 7376687 ~ 7379487 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other upstream 738971 7066855 ~ 7073538 (+)
G139492 NA other upstream 1659389 6147748 ~ 6153120 (+)
G139176 NA other upstream 2713765 5096731 ~ 5098744 (+)
G138941 NA other upstream 3782585 4029524 ~ 4029924 (+)
AMCG00002960 NA other downstream 87789 7909252 ~ 7920908 (+)
G139784 NA other downstream 101719 7923182 ~ 7926832 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 216114 8037577 ~ 8044413 (+)
AMCG00002982 NA other downstream 671542 8493005 ~ 8496965 (+)
AMCG00002996 NA other downstream 1415277 9236740 ~ 9244099 (+)

Expression


Co-expression Network