AMCG00002956 (fbx37,fbxl15)


Basic Information

Item Value
gene id AMCG00002956
gene name fbx37,fbxl15
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7817761 ~ 7826227 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002956
GGGAACCAAAACAAAGGTGCACACGAACCCGGAAGGCTGGTGCGTCTCATTGTGCAAATCCAGTGCAGCGCCGGACTGTGATGTCTGCAGAGATGGAGGAAGGACCTGAGGGCTGCAGGTATCAACTCTTGGACTTGCCATGGGAGGATGTGCTGGTCACTCACATATTTTGTTATCTTCCACTGCGCCACCTAGTTAACCTGCAGAGAGTTAGCAAGCAGTTCCAGGCCCTCATTCAGGTCTATTTGGCCAATTGTCGTACATTTGACCTCTCTCAgGTTGGACCTTACATATCAAAAGAGGCATTCTGCACTATTCTTAAAGACAACAAAGTTCTTCAGAACCTGGCGCTCCAGAACTGCTCCGATTGGGTGACGGATAAGGAACTGCTCCCTGTGATTGGTCAGAATCAGCACTTGCTACGGGTTGATATGAAAAGCTGTGTCCGGCTGAGCCGCCACTCCCTCGTGGCGGTTTCCCTCAGCTGTGCCCACTTGCAGCACCTAGGCCTGGCTCACTGCGAGTGGGTGGACAGTCTTTCTCTGCGCAGCCTGGCGGACCACTGCAGGGGCCTGCAGTCCATAGACCTGACGGCATGTCGCCAGCTCAAAGATGATGCTATCTGCTATCTGGCCAAGAAATGTCCAGATATGAAGTCCCTGTCCGTTGCGGTCAATGCCAACATCACTGATGTTTCTGTGGAGGAGGTGGCAAAGAACTGCCGTGAGCTGGCAGAGCTGGACCTCACGGGCTGTCTTCGGGTTAGGAATGAGTCCATCAGGACTGTTGCAGAGTACTGCACGAAGCTTCGGTCACTGAAGGTGAATCACTGCCACAATGTAACCGAGTCCAGTTTAGGCCTCTTGCGCAAGAGGAACGTGGAAATAGATGTGGAACCCCCCCTACAGAGAGCTCTGGTTTTACTGCAGGATGTTGTTGGATTTGCTCCTTTCATCAACCTGCAAATCTAGGCAGAGATCCATAGCACCTTTCTGCTTTTAAGTCTTCAGACGTTTAAGGTTTTCTGATGCCCTGTAAGAGGATCAATTTCCAAGATGAAAAAAACCCAGTGTGTGCTGGCACATCAGTGGAGCGTTCTTCCACAAGATACTTGCACAATAATATTGTGAAACATGTTGAGCATTTATTGTTATGTCAATTTCTTTCAATATATCAAGTTCTGTGAAAATAGCGGTTAGATGTAATTCTGAAGAGTAATATTAGACTAAAAGAAATGGGTGCATTCAAAATAAGTTGGTGGGAAGTTCtcgtattaaaaataaaataaatagtttcataCCTCATCCCACAAATAATTTGCAACTGTGAGTGCAGCTTTGCcagcttgtgttttgtttttaaagggcaATCACACCTAAACCACAGTTCACATATGCATGAATAGGATAATTTAGGAGCAAAACCATGACGGCTTTCCCTGTCATGTCGAATGAGACATCTGAAAGAgttacacatattatatacaaatttaCACTGGAATGTGCAATGCTATCCTGTGAATTAAACTGTTGTAAACGGCATTGATTTATGACGGGGAACTTCCAGAAACAGTTTACTCAGGTTAAAAGCTAAGACAAAGAggtaatatataaaatgaacaaCACTTAAAGGCAAACCATTAAGCATAAACCtcctgtatatttaaataaactaacaatatgATTTGGATTATAT

Function

symbol description
fbxl15 Acts upstream of or within dorsal/ventral pattern formation. Predicted to be located in cytoplasm. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in head. Orthologous to human FBXL15 (F-box and leucine rich repeat protein 15).

NR:

description
F-box/LRR-repeat protein 15

GO:

id name namespace
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0030513 positive regulation of BMP signaling pathway biological_process
GO:0016567 protein ubiquitination biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0030282 bone mineralization biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10281 FBXL15; F-box and leucine-rich repeat protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002956 True 1695 mRNA 0.45 5 7817761 7826227

Neighbor

gene id symbol gene type direction distance location
AMCG00002950 ghitm coding downstream 349747 7459932 ~ 7468014 (-)
AMCG00002951 NA coding downstream 371189 7434251 ~ 7446572 (-)
AMCG00002947 NA coding downstream 410243 7402581 ~ 7407518 (-)
AMCG00002948 chat,LOC107588646,LOC107683741,LOC107707518,LOC108245700 coding downstream 446148 7363052 ~ 7371613 (-)
AMCG00002941 NA coding downstream 619772 7189337 ~ 7197989 (-)
AMCG00002958 hif1an,fih1,LOC106577208 coding upstream 6864 7833091 ~ 7843208 (-)
AMCG00002957 wnt8b,LOC103355142,LOC102196387 coding upstream 43374 7869601 ~ 7873602 (-)
AMCG00002963 scd,LOC107659656,LOC103362465,LOC107715223,LOC108246230 coding upstream 69126 7895353 ~ 7901361 (-)
AMCG00002964 NA coding upstream 83322 7909549 ~ 7910955 (-)
AMCG00002962 NA coding upstream 99783 7926010 ~ 7927595 (-)
G139752 NA non-coding downstream 359270 7455544 ~ 7458491 (-)
G139668 NA non-coding downstream 598569 7218869 ~ 7219192 (-)
G139639 NA non-coding downstream 744225 7001665 ~ 7073536 (-)
G139593 LOC100846954,LOC107575789 non-coding downstream 1307636 6482267 ~ 6510125 (-)
G139496 NA non-coding downstream 1658998 6157743 ~ 6158763 (-)
G139825 NA non-coding upstream 119825 7946052 ~ 7946521 (-)
G139867 NA non-coding upstream 284798 8111025 ~ 8115245 (-)
G139881 NA non-coding upstream 355063 8181290 ~ 8181576 (-)
G139902 rps24,LOC106591086 non-coding upstream 404142 8230369 ~ 8234284 (-)
G139937 NA non-coding upstream 668627 8494854 ~ 8495297 (-)
AMCG00002945 NA other downstream 464940 7348811 ~ 7352821 (-)
AMCG00002935 LOC106589936 other downstream 751411 7062473 ~ 7066350 (-)
G138932 NA other downstream 3814957 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 3864437 3928761 ~ 3953324 (-)
G138741 NA other downstream 5098342 2718208 ~ 2719419 (-)
AMCG00002970 cj104,anapc16 other upstream 104939 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 659134 8485361 ~ 8494596 (-)
G140006 NA other upstream 1020805 8847032 ~ 8847840 (-)
G140015 NA other upstream 1410431 9236658 ~ 9237730 (-)
AMCG00003017 NA other upstream 1770716 9596943 ~ 9607316 (-)

Expression


Co-expression Network