AMCG00002962


Basic Information

Item Value
gene id AMCG00002962
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7926010 ~ 7927595 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002962
AGAGAAGGCAGGAGGCTATTGCGTTGCACTTATTTTCATAGCACTCGGACGCAATTCAAGCCAATCCGGATTAAGTGAAGCCTGAAAACATACCTCTCAATCCGAAGTGACTAGATCGGGATCTGTATACTTCATCTCTGCGAATCATGCCTGCAATGTGTGCCAACCTGACCCCGGAGAGAAGTTTCCCATCCTCTCCGGTCGCCGACGCTTCGTCCAAGAGACTTTCCTGGGGTAAACTGATGCAGAAACTGAGCGACTTTGGCGGAGTCAACGGCAACCATAGCATCGACTCCGACTCCGACACTTCCAGTAGCGATTTCTCCGACATCGAGGAGACCTTGTGCACAGAGGTGGTGGACCTGATTGGATGCAGTCTGACTGAAGCGAAAAACGGTGCTCTGAAATGCTCCAAACTTCTCATCCCTGACCAGCTAATGGCGCACATAGGCCAGGAGCTGCTTCATCTGGCAGCCAGCGAGCCTTGTGGCTTGAGAGGAGCACTTATTGACTTGTATGTGGAGCAGGGAAATGTCTGCCAGAGTGTGGAGCAGATTGCAGTGGATCCTTTCCTTGTCCCTACCTTCCAGCTGACCTTGGTTCTGAGGCTGGAATCTGGTGGGCTGTGGCCGAGGATCCAAGATCTCTTCACGACCAGATCCCCGTCCGCACCGGCCCCGAGACATGCCCTGAAATTCAGCACAGGCTTTAGGGTGATCAAGAAGAAACTGTACAGTTCAGAAGAGCTACTTATTGAGGAGTGTTGAACCCCAAAGGGAAATACTTAGAAACTGTCAATAGATCCATTGGTATGATTTATTAGACGCCTTCCTTATCATGCCTTGGAAGGTATGAAGATTGTTAATGCCAGCATGACCAGTATACAATGTTTGTCGGTTTAAAAGGCAAGATCAGAATGAAGTTCTGAGATGTTCTGATCTTTGCTGAATGTGTAACCTGGGCTTGTTCCATTCCAACATGtccttttatgatttttaacatGAGTTGCATGGCCAGTGTATCAAGAGCAGTAAAACTACAAAATCTGctgcctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K08270 DDIT4, REDD1; DNA-damage-inducible transcript 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002962 True 1086 mRNA 0.47 3 7926010 7927595

Neighbor

gene id symbol gene type direction distance location
AMCG00002964 NA coding downstream 15055 7909549 ~ 7910955 (-)
AMCG00002963 scd,LOC107659656,LOC103362465,LOC107715223,LOC108246230 coding downstream 24649 7895353 ~ 7901361 (-)
AMCG00002957 wnt8b,LOC103355142,LOC102196387 coding downstream 52408 7869601 ~ 7873602 (-)
AMCG00002958 hif1an,fih1,LOC106577208 coding downstream 82802 7833091 ~ 7843208 (-)
AMCG00002956 fbx37,fbxl15 coding downstream 99783 7817761 ~ 7826227 (-)
AMCG00002967 NA coding upstream 70107 7997702 ~ 8005740 (-)
AMCG00002968 sar1b,LOC107668454 coding upstream 78726 8006321 ~ 8010936 (-)
AMCG00002971 NA coding upstream 85257 8012852 ~ 8021402 (-)
AMCG00002972 NA coding upstream 95052 8022647 ~ 8025932 (-)
AMCG00002969 NA coding upstream 105860 8033455 ~ 8038071 (-)
G139752 NA non-coding downstream 467519 7455544 ~ 7458491 (-)
G139668 NA non-coding downstream 706818 7218869 ~ 7219192 (-)
G139639 NA non-coding downstream 852474 7001665 ~ 7073536 (-)
G139593 LOC100846954,LOC107575789 non-coding downstream 1415885 6482267 ~ 6510125 (-)
G139496 NA non-coding downstream 1767247 6157743 ~ 6158763 (-)
G139825 NA non-coding upstream 18457 7946052 ~ 7946521 (-)
G139867 NA non-coding upstream 183430 8111025 ~ 8115245 (-)
G139881 NA non-coding upstream 253695 8181290 ~ 8181576 (-)
G139902 rps24,LOC106591086 non-coding upstream 302774 8230369 ~ 8234284 (-)
G139937 NA non-coding upstream 567259 8494854 ~ 8495297 (-)
AMCG00002945 NA other downstream 573189 7348811 ~ 7352821 (-)
AMCG00002935 LOC106589936 other downstream 859660 7062473 ~ 7066350 (-)
G138932 NA other downstream 3923206 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 3972686 3928761 ~ 3953324 (-)
G138741 NA other downstream 5206591 2718208 ~ 2719419 (-)
AMCG00002970 cj104,anapc16 other upstream 3571 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 557766 8485361 ~ 8494596 (-)
G140006 NA other upstream 919437 8847032 ~ 8847840 (-)
G140015 NA other upstream 1309063 9236658 ~ 9237730 (-)
AMCG00003017 NA other upstream 1669348 9596943 ~ 9607316 (-)

Expression


Co-expression Network