AMCG00002963 (scd,LOC107659656,LOC103362465,LOC107715223,LOC108246230)


Basic Information

Item Value
gene id AMCG00002963
gene name scd,LOC107659656,LOC103362465,LOC107715223,LOC108246230
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7895353 ~ 7901361 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002963
ATGGTGCTTCTCTGCTATGAAAATGTCTGCTGTCGTCTTCAGCTCCTCTCTCCACGCAAAGCACGGCAGAAAGGCCCCCCGATGATGAAGCACGACGACCCCGGCGCGACCACCGTGCTGCACCGGAATGGCAGCGCCGTCGCCGAGCCCTCCACCGTGGAGGATGTGTTTGACGACACCTACCGAGAGAAAGAGGGTCCGAAGCCCCCCAGAAGGGTGGTCTGGAGAAATGTCATCCTGATGAGTATGTTACACGCAGGAGCCGTGTATGCGCTGTTTCTGCTCCCCTCCGCATCTGCCGCGACCTTGGCTTGGTctttcatttgtttcatgATCAGTGCATTAGGTGTGACGGCAGGAGCTCACCGGCTCTGGAGTCACCGCTCCTATAAGGCCTCATTGCCTCTGCGAATGTTCCTTGCAACTGCCAACTCAATGGCGTTCCAgAATGACATTTACGAGTGGGCACGGGACCACAGAGTTCACCACAAGTACTCTGAAACCGATGCTGACCCCCACAATGCTGTGCGcggctttttcttttctcacatCGGGTGGCTGCTGGTGCGCAAACACCCGGACGTCATCGAAAAAGGACGCAAACTGGAGCTTGGTGACCTGAGGGCAGATAAAGTTGTCATGTTTCAAAGAAAGTATTACAAGATGTCTGTGGTGTTGATGTGCTTCGTCGTCCCCACCATGGTGCCCTGGTTGCTGTGGGAGGAGTCTCTGTGGTTGGCCTACTTCATCCCTGGGCTGCTGAGATACACCATAGTCTTGAACGCCACTTGGCTGGTGAACAGTGCAGCCCACATGTGGGGCAACCGGCCTTATGATGGAAATATCAATCCTAGGGAGAACCGCTTTGTCACCTTCAGTGCCATAGGGGAAGGGTTTCATAACTACCACCACACATTCCCGTATGACTATGCAACAAGTGAGTTTGGCTGCAAATTGAACTTTACCACCTGCTTCATTGACTTTATGTGTTTCCTGGGCCTGGCAGAAGAACGTAAGAAAGTACCTCGTGAAATGGTCATGGCTCGAGCCCAGCGCACAGGAGATGGCAGCCACAGAAGTGGTTAAGAGGCTTCATGATTCTGGAgcttgaaaacaaaaagcataattgcaaagtatttttgggggggtggtaCTCTTTTGTGTAGCTACAGTGATGGCTTCACACCCCttgtgaaataaacatttccctAGTTCATAAGATTAATATTAGCTTTAAAGGGAACTGGACCTTGATGTAATGGATTTTTTtcgtttgttttctttgtttgtaattGCAGCAATAGAACCCATATGGGGTGGAAAGAAATCCATCTGGAGCCATGAAATTCTGGCTCTTATTGTAGGCCTATCCTAGAATCCAGAGTCTGTGCAATGGCCATAGAGAGCTTACTTTCTAGAGCTTGTACAAAAGATTGGGAAAACAAACCAAGGGTGTGTTTGTGGATGTCGCATAGATCGTAAGTTTATTTAGCTGCAGCTACACATATCCAGATAATTTGGTGGAGAAATGTACTTTTGGTTCAAGCAAATTAAGCGCAATGATTACAATTACCGCACTTTAAAATATctactgtactttattttagGATGACAATTCAGTGTCTGAAACTTGGTCACATTAAAGGTAAACCGGAGCTCTGATCTTATTTACGGCATAATACCCCAATATTAAGCCATGTCAGTGCTTTCAATAACAATAACTTAGTTCAAATGGAAGGTGTATCTCTagaaaaagcatttcaatttaatttcttttgtaTGCAGCTGCCTTCAGTTTCTTACTCAATGTTGCTGTAGTTTACAGCAAATACATGTTTACATCAAACAGAATAAACTGTTCAACTAtcagtattattttacatgGGGGTCCTTGGAAAAACATTCAGTTCTAAAGGGGATGGTGTATATTGTAAAATGCTGCAGGCAGAAGGATACAACAGAAATGTTACTTAAGAGGTGCTTTTTGAGAGTCTTTTCAACAAAAAAGGGGGTGGCATCTGTAATGGCAAGATGTGATTTATCTACGATCAGGCTAGTCTGTTTGTGGCTTAGGCTGATGGTAGTACTGAGGATGTCTGGTTTGGCTTGTACCTCGTGAATGTCCAGTGCTATGAAGGTCTTTGAAAGTTAGTAGACAGTCACTGTCAGGTCACTCGGAGGAATTGAGTTAGTTTGCAGTTCCAATGCTATTGGGAAACTATAGCATTggggaataaataaatctaaatttaaagGCACGTCTCCCACTAATTATATTGAACCATTACTTTCAAATCTGATGGAAAGAGTCTGCAAATTGGAACACCTTCATATTGTTCATCCAGGTTTGAACAAACTCTGTCAGGAAACCATGCCCACTGCCTTACTGATTTAATCCAATCTGTTCCCAGCTCTGCATTGAGTTCCATCAATGTGAGCCACTTTACCCACAGAAGTGCAAGGCAATATACAAGATGCATACTGAAAACTGCCAAACTGGACATAGTTTGCACATTTGTTGATTTGAAAGAGAAGTGGTGTTCTTACTTTATTTTGGCAGGGCCTTTTGTGTTGAATTTAGACAGATATGCCAACTAGGATTACAACTTGGCATCTCTGCTTGAAACTTTGAGACAAAAAAAGGTGCTTTATCAGTGACTGTCTTAACTGCCAGTGAGAGCTAACCTTAGCACTTACTAAACTCCACACTATGGGAtcattacatgtgtatttccCTCTTGGTTCTCATTGATCCAAAAGGAATGTTCATAACTTTGATATTCTTTAACATTGTGGGGGAAAGAAATTAAACTATATAAGTAGTAGTACATTGCAATGTGTGTACTTCTAGCTCCGAAATAGAATTTGGAGGTTTTcaactaaataaaattgtaattgaattaattactgTTGCTCTACCTTTTGCGTTGTGGTTATTTTCCAGTGTTGACTTATTGAATTATGAATGCCTTAAATAACTTATCGGGCACATTTTGAGGGGAATGTTTAATGCACTGTATGTATTGAAAATTAAGTATATTTTCTAAAGGGGGGAAAATACTGTaactgtgtttgttgtttttgttatgatgccacagtaatttattttttttcttaattcaaataaaaagaaactgcaTTATGGTTTGTCCAGTCTTCTTAAGCaacaagtaaaatgtattaacaggTGCAATGAAATTAGTTGGTGTAA

Function

symbol description
scd Predicted to enable iron ion binding activity; palmitoyl-CoA 9-desaturase activity; and stearoyl-CoA 9-desaturase activity. Predicted to be involved in monounsaturated fatty acid biosynthetic process; response to fatty acid; and unsaturated fatty acid biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in brain; female organism; heart; liver; and muscle. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 79. Orthologous to human SCD (stearoyl-CoA desaturase) and SCD5 (stearoyl-CoA desaturase 5).

NR:

description
PREDICTED: acyl-CoA desaturase

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004768 stearoyl-CoA 9-desaturase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K00507 SCD, desC; stearoyl-CoA desaturase (Delta-9 desaturase)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002963 True 3211 mRNA 0.42 5 7895353 7901361

Neighbor

gene id symbol gene type direction distance location
AMCG00002957 wnt8b,LOC103355142,LOC102196387 coding downstream 21751 7869601 ~ 7873602 (-)
AMCG00002958 hif1an,fih1,LOC106577208 coding downstream 52145 7833091 ~ 7843208 (-)
AMCG00002956 fbx37,fbxl15 coding downstream 69126 7817761 ~ 7826227 (-)
AMCG00002950 ghitm coding downstream 427339 7459932 ~ 7468014 (-)
AMCG00002951 NA coding downstream 448781 7434251 ~ 7446572 (-)
AMCG00002964 NA coding upstream 8188 7909549 ~ 7910955 (-)
AMCG00002962 NA coding upstream 24649 7926010 ~ 7927595 (-)
AMCG00002967 NA coding upstream 96341 7997702 ~ 8005740 (-)
AMCG00002968 sar1b,LOC107668454 coding upstream 104960 8006321 ~ 8010936 (-)
AMCG00002971 NA coding upstream 111491 8012852 ~ 8021402 (-)
G139752 NA non-coding downstream 436862 7455544 ~ 7458491 (-)
G139668 NA non-coding downstream 676161 7218869 ~ 7219192 (-)
G139639 NA non-coding downstream 821817 7001665 ~ 7073536 (-)
G139593 LOC100846954,LOC107575789 non-coding downstream 1385228 6482267 ~ 6510125 (-)
G139496 NA non-coding downstream 1736590 6157743 ~ 6158763 (-)
G139825 NA non-coding upstream 44691 7946052 ~ 7946521 (-)
G139867 NA non-coding upstream 209664 8111025 ~ 8115245 (-)
G139881 NA non-coding upstream 279929 8181290 ~ 8181576 (-)
G139902 rps24,LOC106591086 non-coding upstream 329008 8230369 ~ 8234284 (-)
G139937 NA non-coding upstream 593493 8494854 ~ 8495297 (-)
AMCG00002945 NA other downstream 542532 7348811 ~ 7352821 (-)
AMCG00002935 LOC106589936 other downstream 829003 7062473 ~ 7066350 (-)
G138932 NA other downstream 3892549 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 3942029 3928761 ~ 3953324 (-)
G138741 NA other downstream 5175934 2718208 ~ 2719419 (-)
AMCG00002970 cj104,anapc16 other upstream 29805 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 584000 8485361 ~ 8494596 (-)
G140006 NA other upstream 945671 8847032 ~ 8847840 (-)
G140015 NA other upstream 1335297 9236658 ~ 9237730 (-)
AMCG00003017 NA other upstream 1695582 9596943 ~ 9607316 (-)

Expression


Co-expression Network