AMCG00002968 (sar1b,LOC107668454)


Basic Information

Item Value
gene id AMCG00002968
gene name sar1b,LOC107668454
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8006321 ~ 8010936 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002968
CAACACATATTGAAGCTGGACGTCTATTGCTCTTTGGCATATTCTCAGTGTaactttcctttcctttgtaTTTAGGGACCTGTTTAACATGAACACATTCAATGCACGCAAATGAAATGCTTACTTACCATGAaactattgttttctttcaggtaACACAGACCCAGAAAtgtcatttatatttgattGGATCTATAAAGGGTTTAGCAGCGTGCTACAATTTTTAGGTTTATACAAGAAATCCGGGAAGCTAGTTTTCCTTGGCTTAGATAAtgctggaaaaacaacattattgcATATGCTTAAAGATGATAGACTTGGGCAACATGTGCCTACATTGCATCCAAccTCTGAAGAGTTGACGATTGCAGGAATGACTTTCACCACATTTGATCTTGGTGGGCATGCGCAAGCAAGAAGGGTTTGGAAGAACTACCTCCCAGCTATAAATGGAATTGTCTTTCTAGTGGACTGTGCAGATCATTCTCGCCTTCAGGAGTCTAAAATAGAGCTGGATGCACTGTTGACGGATGAGACGATCTCAAATGTGCCAGTCCTCATTTTGGGCAATAAGATTGACCGTTCAGAAGCTGTCAGTGAAGAGAAATTGCGAGAAATGTTTGGTCTTTATGGGCAGACAACAGGAAAGGGCAATGTGTCATTAAAGGAATTGAATGCACGGCCTATGGAGGTGTTCATGTGCAGTGTGCTGAAGAAGCAGGGATATGGTGAAGGCTTTCGTTGGCTTTCTCAGTACATTGACTGATCTTGTCAAGACTGTGTTGTATCAGGCCGGACTGAGGTGGCTCCTTCTAACAGTTTTTGTACCAAgacatggaaaacaaggactgGTATCTTAATGGAAAGTTGTTAACCTCTGATGTATTTACCTGGCTTCAAAGTACAACGTCTGATTGTCCAAATGGCTAATAGTTTAGGTGTTTACCACAATATGCTGAAATTTAAATGGTCTCAAACAGGACTCACAACCTATACTTTAGTACAGGtctgatacttaaaaataaataaacaaagaaacaaacaaaaaacggaATGTGCTCCACAAGGGTAAGGATAAAACAAAGCTTCCCATCCTAGCCATGGCCATGAACTTTTACATAGGCATTGCAAACAAAAGTTATTCTATGTAAGCCATTCACTCTCAAACAAGATACTGAAAATTCATGTCAACATTTCCTAAAATAAAccccgattttttttttttagaacatttttgtttagagAACAAAATGCATAGTCCAGTTCAAGAaaaaatttaaatggaaaaaataataatcaaaaacgTTTTGGTTTTCGTAAGTATGGCAAGCactgttaaaatgtgtgtgatcAATTAGTGCAGTCAGTGGTTATAACTAAGTGAGCACACAAGAAAATATCGGATCCTTTTTATGGTTGAATTCGAAAGCACAAGATCTTAACAATAATCCCTAAGCTTACCACCGGGCAGTCACCTACTGACTATAACTGAAGTCATAATATAATAGAATCTCTTGAGCtgggtttatttttggaatgctGATTTGAATAATTGCAAAGAAGGGAAAAGAGttataaaatagtgtttttgCCTGTGCTGCTATTGCCTTTTACATACTCAGCCAAAGACatgcaacttaaaaaaataataattcctgaATCAAACAGTGTTTTCAGTATATGATATCATACTACAGTTTCTATAATAAGTTCAGCACAAGCAAAGAAATGGTGGAACATAACCCCTTGAACAGTTTGGACATTTGAAACTGGTtgtggaaaaaagtatttttcggACAGCAATAAAGCGTGGAGAGCAGCAATAGCAAGTCCAGTTGAAAAAGAGGGTAAGATTGTTGTTTAAATGGATATGATCATGATAACTTTGGCACATGTCCCGTACTGAAAAACGACAGGTTTGATAGTCTCTTCTGTACAGTGGGCTTACTCACCGTGCAGATTTACTACTTCACAAATGTAATTGGCAGCAGAAATAATGGGTTAGTTTCAATATTACTAATCAAGGCACATCTTGCTTgtttaaaacacatgtattttttttaattatctttggtttgacatttgtttgtttttactgaaaaaTGTGGTATTGACTGACCAGTGTAGTATGGCCATCACTGGTTAtcttacttttattattaatattataatttacactAAGTTTACAAgctttaaagttgtatttaacatttaatgctTTTAGGAACCTTTTTTTGCAGCATACTAAAGGTAACACTGAAACAATTTGCAGCATAATGATCTTCGGTGGGGGTTGAGGGAGGGGGGTTcttgtatgtactgtacatgttaatGTAGATAATGAAGTTTGTCTATATTGTCTACTGTTTGAATTATTGCATATAACTGATAAATATTCACTGAGTAAGAATTAGAGGTGCAGAAGGTATTTTTTGAATATTAACTACTAGCAATCTCAGTATTGCTACCAGTAGAATATGAGAGTACTTATATTGCACCACAGCATAGCTTCCGGAGTTCAATCTTTGTATGTGCACTTCATGTATCTATCATGCAGCAGTTACATTTTTAGcataattgtaaataatgtaaaattactTGGGATACTACCCCCAATATTACAGTTAATCTGCTTCTGGAACTGTCTTATAAGTGCATCACTGAAGGAAAAGGATTCCGATTTTTATTGATAGTCATAGATCTTTGGGAAATCACCAGAACCTTCAAATAATCTGCTGTGCCAACTATTGTTATCTTTTTGGCATATTTTTATTGATAAGGATCATGTCTGGTCCTTGAAAAAACATACACTGTACCATGGAATGGGCATGTTCTTTATGCAATTAATTTCTAATGACCATACTCAGTGAGGGTGTTAAGATCTCTTTCCTACAGATCAGAATATCCCCTAAAATACCCCCCTTTTTTCATTGGGGTGGAGGATGGGGAACATTTTcctaatttaattttttgtttgtgtcatttcagaatataattaaaaataaatattgtacaaaGTTGTTTTGTCCTTTGCAAGA

Function

symbol description
sar1b Predicted to enable GTPase activity. Acts upstream of or within several processes, including embryonic viscerocranium morphogenesis; intestinal cholesterol absorption; and organ growth. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Is expressed in blastomere; digestive system; nervous system; pharyngeal arch; and primary germ layer. Used to study chylomicron retention disease. Human ortholog(s) of this gene implicated in chylomicron retention disease. Orthologous to human SAR1B (secretion associated Ras related GTPase 1B).

NR:

description
PREDICTED: GTP-binding protein SAR1b

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07953 SAR1; GTP-binding protein SAR1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002968 True 3038 mRNA 0.36 6 8006321 8010936

Neighbor

gene id symbol gene type direction distance location
AMCG00002967 NA coding downstream 581 7997702 ~ 8005740 (-)
AMCG00002962 NA coding downstream 78726 7926010 ~ 7927595 (-)
AMCG00002964 NA coding downstream 95366 7909549 ~ 7910955 (-)
AMCG00002963 scd,LOC107659656,LOC103362465,LOC107715223,LOC108246230 coding downstream 104960 7895353 ~ 7901361 (-)
AMCG00002957 wnt8b,LOC103355142,LOC102196387 coding downstream 132719 7869601 ~ 7873602 (-)
AMCG00002971 NA coding upstream 1916 8012852 ~ 8021402 (-)
AMCG00002972 NA coding upstream 11711 8022647 ~ 8025932 (-)
AMCG00002969 NA coding upstream 22519 8033455 ~ 8038071 (-)
AMCG00002975 NA coding upstream 34279 8045215 ~ 8048434 (-)
AMCG00002981 NA coding upstream 163976 8174912 ~ 8176893 (-)
G139825 NA non-coding downstream 59800 7946052 ~ 7946521 (-)
G139752 NA non-coding downstream 547830 7455544 ~ 7458491 (-)
G139668 NA non-coding downstream 787129 7218869 ~ 7219192 (-)
G139639 NA non-coding downstream 932785 7001665 ~ 7073536 (-)
G139593 LOC100846954,LOC107575789 non-coding downstream 1496196 6482267 ~ 6510125 (-)
G139867 NA non-coding upstream 100089 8111025 ~ 8115245 (-)
G139881 NA non-coding upstream 170354 8181290 ~ 8181576 (-)
G139902 rps24,LOC106591086 non-coding upstream 219433 8230369 ~ 8234284 (-)
G139937 NA non-coding upstream 483918 8494854 ~ 8495297 (-)
G139960 dlg5 non-coding upstream 606499 8617435 ~ 8618101 (-)
AMCG00002970 cj104,anapc16 other downstream 68080 7931166 ~ 7938241 (-)
AMCG00002945 NA other downstream 653500 7348811 ~ 7352821 (-)
AMCG00002935 LOC106589936 other downstream 939971 7062473 ~ 7066350 (-)
G138932 NA other downstream 4003517 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 4052997 3928761 ~ 3953324 (-)
G139933 LOC108443181 other upstream 474425 8485361 ~ 8494596 (-)
G140006 NA other upstream 836096 8847032 ~ 8847840 (-)
G140015 NA other upstream 1225722 9236658 ~ 9237730 (-)
AMCG00003017 NA other upstream 1586007 9596943 ~ 9607316 (-)
AMCG00003049 NA other upstream 2290864 10301800 ~ 10331372 (-)

Expression


Co-expression Network