AMCG00002969


Basic Information

Item Value
gene id AMCG00002969
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8033455 ~ 8038071 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002969
tttttatatcGCATTTACATTTCACTGTAGTTAAGGGGAAAAGTACAAAGTAACACAACTATTATATTCTTTGTTTGTGAAGAATAAAACCCGCACAACAGTGTGTGTTCCCGAAAAGCCCAGCTGGGGAGTTGGCCGCACGCTGTGATTGGCCAGCCGTACGAGGAAGTGCAGCTGCTTCTGTACCTCAATGTGCACAGGAGTCAAAGGGGGGGCCCGACTAATCAGGTAAGGGATTTGCGCATCTGCTAATACACGTTTACTCAAAGTTACAGTAACAACTGGAGAAGTGCAATTGACTACTATCcacaggagctgctgctgGCAAGATGGGGGAAGCTGTAGCTAATGTTGCCAGGAGGATTAATGCAATTGTAGAAGATGAGAAAGACACCCTGGatCTTTATAACTGCAAACTGATTAGCTTTCCCGATGCAGTCTATAAAGTCTTAAGAAGTGTCATAGACAAGATCCATGTCATCACACTGGCGAacaatgaaattaaagtaataagCAGCAAATTCTTTACCACCTTCACACAGTTAAGAGaactGAACATGGAAGGTAATAAGCTAACCAAGCTCCCAGATGAAACTGGCACGATGCTGCACTTGACAAGCATCAACTTGGCCAGAAATAAATTTTCTGTCTTCCCAGAGAGACTTACTGATATTAAAACTCTTGAAAAGATTGATCTGGAGGGAAATGAAATCACTGAAGTACCAGTGGAAAAGCTCCTGACTATGCCAGCTTTACAGAGTGTAAATTTGAAGTCTAATCCTCTGAACAAAGAGAGTTTAGCAGTCATTAGACCATCCTTAACATTTGCGCTATTGACTACTGTTGAAGACTGAAGCATGTTCTGCTAAATGAAATTTAGCCTTACAggatttttaacattttccatattattttttcttatggAATGTaacttattatatttattttgctgtggttATGGTTATGGATGAGGACCGAGTTTATTTTCTAAACCTGTTTTAAAGCACCAGAGTGAGTTAACTACAAATGTACCACCAAGTGCAGATTTGTTGAGCATGGTTTGGCAGTctttctagttttttttaaaaaggactATGCATTCATTGAATGTGAAGCTTGTGGATTGAATATATTCTTAAGTGCATGGTGCACCAATAATGTAAAATGCCCCGTGTCACCCCAAGAAAATACACCAGCTGGTTTTTCTAAGAATGGACTGTTTACGATTTCTCTTTGAGGCAACTTGTTCTAGTTTTGCAGTTTGTAGCAACAATTGGCAAACAATGAAGACAACTGTGGACAGGTTTTACCTTAACAGCTCTTATTATGTGTTCTAATTAGTTCTGGAAGTTTTCCAAGAAGGCAGCTGCATGAACTGAAATGAATGCCTAAATTAGAATGTGGATTTAATTTTGCTTGGTGTTATTGCCTTCCAGTGGCCAGTTTATTAGATACTGAGTGAAAATGAATCAAC

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko04110 Cell cycle
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002969 True 1474 mRNA 0.39 5 8033455 8038071

Neighbor

gene id symbol gene type direction distance location
AMCG00002972 NA coding downstream 7523 8022647 ~ 8025932 (-)
AMCG00002971 NA coding downstream 12053 8012852 ~ 8021402 (-)
AMCG00002968 sar1b,LOC107668454 coding downstream 22519 8006321 ~ 8010936 (-)
AMCG00002967 NA coding downstream 27715 7997702 ~ 8005740 (-)
AMCG00002962 NA coding downstream 105860 7926010 ~ 7927595 (-)
AMCG00002975 NA coding upstream 7144 8045215 ~ 8048434 (-)
AMCG00002981 NA coding upstream 136841 8174912 ~ 8176893 (-)
AMCG00002978 NA coding upstream 145384 8183455 ~ 8195892 (-)
AMCG00002980 NA coding upstream 160605 8198676 ~ 8203314 (-)
AMCG00002979 polr3a coding upstream 176825 8214896 ~ 8229129 (-)
G139825 NA non-coding downstream 86934 7946052 ~ 7946521 (-)
G139752 NA non-coding downstream 574964 7455544 ~ 7458491 (-)
G139668 NA non-coding downstream 814263 7218869 ~ 7219192 (-)
G139639 NA non-coding downstream 959919 7001665 ~ 7073536 (-)
G139593 LOC100846954,LOC107575789 non-coding downstream 1523330 6482267 ~ 6510125 (-)
G139867 NA non-coding upstream 72954 8111025 ~ 8115245 (-)
G139881 NA non-coding upstream 143219 8181290 ~ 8181576 (-)
G139902 rps24,LOC106591086 non-coding upstream 192298 8230369 ~ 8234284 (-)
G139937 NA non-coding upstream 456783 8494854 ~ 8495297 (-)
G139960 dlg5 non-coding upstream 579364 8617435 ~ 8618101 (-)
AMCG00002970 cj104,anapc16 other downstream 95214 7931166 ~ 7938241 (-)
AMCG00002945 NA other downstream 680634 7348811 ~ 7352821 (-)
AMCG00002935 LOC106589936 other downstream 967105 7062473 ~ 7066350 (-)
G138932 NA other downstream 4030651 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 4080131 3928761 ~ 3953324 (-)
G139933 LOC108443181 other upstream 447290 8485361 ~ 8494596 (-)
G140006 NA other upstream 808961 8847032 ~ 8847840 (-)
G140015 NA other upstream 1198587 9236658 ~ 9237730 (-)
AMCG00003017 NA other upstream 1558872 9596943 ~ 9607316 (-)
AMCG00003049 NA other upstream 2263729 10301800 ~ 10331372 (-)

Expression


Co-expression Network