AMCG00002976


Basic Information

Item Value
gene id AMCG00002976
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8206391 ~ 8213095 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002976
ATGACCGCCTCCGGTGAGATGGGGTCGGAGAAAATAACCCCCGAGGTACTGGAGCAGCTCCTAGACTATTACAACCTTTCCCGACGGGACTTTATCGACACCTATCATCTGCAACCCCTCATGATCCCTTTTGTACAAAGCACTGCCATAGTGACCGGTATTCTTACAATGACATGCATTGCTGTAGAGAGATACCGGGGAATTGTCTACCCACTGAAAATGAAGAGGCAGTGCACCCCAAAAAGAGCCTACAGGATGCTTGGAGTTGTGTGGAGTGCAGCTGTGATTGTTGGATCTCCATTACTGTATGTTCAGCAGCTGGAGGTGAAGTACGATTTCCTCTATGACCTCCATCACATCTGCTGTCAGGAGCGCTGGCATTCCCCCACACATCGCCAGGTCTATGCCACCTTCATCCTGGTGGTGCTCTTCGTTCTGCCTCTGACAGCCATGCTCTTTCTCTACACCAGAATAGCTTTCAAACTCTGGATCCGAAAGCAAGTGGGAGACTCTTCGGTCTTAAACACCATGAACCACAGGGAGATCAACAAAATCGCCAGGAAGAAGAAACGTGCTGTTAAAATGATGATTACCGTCGTTTTGCTGTTTACAGTGTGTTGGGCTCCATTTCATATAGTGCACATGCTCTTCGAATATAATGATCTTGAGAAGGAATATGACGACATCACTGTCAGCATGATTATCGCCATTGTGCAGGCTGTAGGGTTCTCCAACTCCTTCAACAATCCCATTGTGTATGCCTTCATGAATGAAAACTTTAAGAAAAACTGTGTGTCAACCCTGTCCTGTTGCCTCAGGAGACCAAACCAGAACTCACAGCAGACAGTTCCCATGGAGAGACCAAAActtaatgtgcattttataaACCATGTGCAACATGAAGCCTTCCATAGAGACACGCCAACACAGGGGATTCAGTTCAGCCTATCTGACAAGGTTGCATCAACCTCATCAAAAGCAACCACTTCCACAGCCTTTGTAGAGGAGAAAATATCAACTGTCCACTGTGAGTTACCAAGCAGCAGTTACAGCTGTTCACACTGA

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004983 neuropeptide Y receptor activity molecular_function

KEGG:

id description
K08378 QRFPR, GPR103; pyroglutamylated RFamide peptide receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002976 True 1065 mRNA 0.47 6 8206391 8213095

Neighbor

gene id symbol gene type direction distance location
AMCG00002973 LOC107595167 coding upstream 33887 8136740 ~ 8172504 (+)
AMCG00002974 NA coding upstream 124597 8070984 ~ 8081794 (+)
AMCG00002966 spock2,LOC108443083 coding upstream 208366 7955216 ~ 7998025 (+)
AMCG00002961 NA coding upstream 259867 7938432 ~ 7946524 (+)
AMCG00002954 NA coding upstream 342970 7847978 ~ 7863421 (+)
AMCG00002977 rps24,LOC102780737 coding downstream 16552 8229647 ~ 8234400 (+)
AMCG00002983 zmiz1,LOC103381918 coding downstream 263597 8476692 ~ 8487793 (+)
AMCG00002984 anx11,LOC100702381,LOC101468000,LOC102303799,LOC102214080,LOC102778943 coding downstream 340484 8553579 ~ 8564616 (+)
AMCG00002989 dlg5 coding downstream 371399 8584494 ~ 8635277 (+)
AMCG00002990 NA coding downstream 428820 8641915 ~ 8642438 (+)
G139880 NA non-coding upstream 24857 8181305 ~ 8181534 (+)
G139850 NA non-coding upstream 184990 8020020 ~ 8021401 (+)
G139838 NA non-coding upstream 200941 8003904 ~ 8005450 (+)
G139837 NA non-coding upstream 202746 8003315 ~ 8003645 (+)
G139836 NA non-coding upstream 203334 8002802 ~ 8003057 (+)
G139906 NA non-coding downstream 66561 8279656 ~ 8280129 (+)
G139915 NA non-coding downstream 284919 8498014 ~ 8499226 (+)
G139916 NA non-coding downstream 286289 8499384 ~ 8507103 (+)
G139917 NA non-coding downstream 294782 8507877 ~ 8508483 (+)
G139918 LOC105903367,LOC108245402 non-coding downstream 322985 8536080 ~ 8536374 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 161978 8037577 ~ 8044413 (+)
G139784 NA other upstream 279559 7923182 ~ 7926832 (+)
AMCG00002960 NA other upstream 285483 7909252 ~ 7920908 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 826904 7376687 ~ 7379487 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other upstream 1132853 7066855 ~ 7073538 (+)
AMCG00002982 NA other downstream 279910 8493005 ~ 8496965 (+)
AMCG00002996 NA other downstream 1023645 9236740 ~ 9244099 (+)
AMCG00002998 NA other downstream 1087216 9300311 ~ 9316633 (+)
G140030 NA other downstream 1112393 9325488 ~ 9330464 (+)
G140189 NA other downstream 1565155 9778250 ~ 9780452 (+)

Expression


Co-expression Network