AMCG00002978


Basic Information

Item Value
gene id AMCG00002978
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8183455 ~ 8195892 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002978
GGGCTTTGTTGACTCCTGCTGTGTTTTCTGAAAGCAGTCTAATACACTTCTAAtccatgtaaatgtattgtgcGCTATACTCTTCATCATGAAAACAAGTGATGCTTTTACACATTCACTGGCTCTTCTCCTTCTGGTTTGGGCTCGGGCAAATGtgTACTCCGAAGCATCTAAGTTTGAGACAGGGACTCTGTATGAGTACCTCTACACTGTGGATGTAGTCCTGGAGCCGACTGCTGAGCATGACCGGATGAGATCTGGATTCTCAATGGAGGCTGTGGTACAGATCCATTCACTGTGGAGAAATCCAAGCAATGAGCAGGACCTGCTGGTCCAAATCAAAtttcaagACCTTAAGGTTATGAGCAACCATAATGGAAGTCAATCCATCTTCATGGATTCGTCAGTAGAAGAGTTACTTGGACAACAGCACCTACATGATTTAAGAAAACCTGTCTTGATTCACTCCATTGGCGGAAAACTGGAAGACGTGTTTGCTGCTAATGAGACCAACAAGTTTATTTTGAATCTGAAAAGAGGGCTTGTTAGTGTTTTCCAGATGCAGACGTATTCTGGAACAGCTACAGAGAATGATGTGACTGGTAGATGCAAGGTTTTGTATGAGGTTTCTGGGaagcaaatcattaaaataaaagatttccAGAGCTGTGAAAAGGAAGATTTTGGCTATACCTCCACAAACCAGGTGTTTGGAGTTAATGTGAATGGAACCAGTAAGTGTATCTATTTAATGGAAAATGACATCATCAAGTCAGTGAAATCCGAGGAAAGCCACCTGATTATGTTGAATTTGAAATCTACAATTGGCACTAAGATCAATTCCAGTCCTTTCCTCATTGATGCAGCTGCAGCAGTCCTGACCCCAGAATCCCTTGGTGCACTTTCATCTTTCCTGGATTTCACAAAAGTAAAGCAGGGTCCTCTCTTGGAGAGGTTTCTGTACgcctgtgctttttctgcaCGGCCATCAACATATTTGCTTAGCACTCTCACCAATATTCTTTCTGGTAAAATTGTTCAAAAAGAAGTACAAGAGACTGCCATCATCACACTGGGTTCAGTGATTGGTAAAATGTGCTCTGCAAATAACTGTACATCGCAGGAAGTAATAAGAGCTAAAAACTTAATTGTGGACAGACTGAAATCCTCTACTGAAGAATTTGCAGTAAAGGCATGTCTTTTAGCCTTGAAGAGTGCCTGTCTTCCAGAAACAATCCCCCTTATTCTTCAGTACACCGAGATGTCCAACTCTGTCTCCATTACTGCTCTGTCAGCACTGCAAAGGTTCCCCGCAAAGTATATTAACAATGAGGTTAAGGAGCAAATGAGAAATATTTTTTATCAGAGGAAGAAACACTTTATTGAAACAGTTCGACTGGCAGCTGCAGAAATTCTCCTGAACAGCGACCCTCAGTATGTAGACATCAGAAATATTATAGAAGCAATACCGAGAGAGGGGCCGGAACCATCCAGATATTTATCATCAAAAATTCAAAGTTGTCTTAATTCTGATCATGGTGCAAGGAAAATCATTGTTGAAGTTTTAAAAGATTCAAACTTAAATAACTACAACCATCTATCCAGGCTTGGCAGTTCTTCAACTTATTCTGGAAATTTGACagCAACCAAGGATATGGTCACCTCTTATAATGTTGACTTCCTCTTTTCCGAGCATGGatttttaagaaaaagtaaCAGTAATTTCTACACCTACAGCCATGGAAATAAACTACTCTCTGTACAGgtTTCTATGGAAGCAAAAGGTCTTGATGGTTTATTCGGTGAAGCTGCTGAGGAAGAGGAGATCATGGCAGGAATGTCAACAACATTACTGGACGTGCAGCTCCGGCCAGTGGTCTTTTTCCAGGGCTATGCAGATCTGATGGAGAAATATTGGTCAGCCAATGGAGAACCACAGCATATACTAATGGCAAATATCCTGCCAATCGACCATCTGCAGGTGTTTTCACTTCAGTCTGGTTTGCCAGTGCTTATCCACTTTCAAGGAGGGCTCACGGTTGATGTCACAAGTAGCACCGAGCTCAGTCTGTTCAGCCAAGAATCAAAGAGCAGAGTCACAAACAGGGGCACCTTGGCAATCAGTGGCACAATAGAGATTGATGCTTCTTTCATAAATGTTGGAGTGGAAACCAGAACAGAAGCTCAGacccagtttgtttttgttaacacTGTGCGCTTCTCAGAAATGCCAGTATTGTTCtgtttgcaaatgaaaaaggaaCCATACCCTTACAgGGAGTCCGTTGTGGTATATGAAAGGTTTCCCAATGGGAAGAACTTCACTTTGCAGAAGAGAAGAAAGTTTACTTTCCCAGGAGAAGAGGTCTCACTACACAAGAGAAATTCTGAGATGTGTAAGAAATTGCTATAGCAAGAAGAGTGAATTCTCCATACATTGAActtacagagaaaaaataaagcactgaatAAGAATGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002978 True 2479 mRNA 0.41 16 8183455 8195892

Neighbor

gene id symbol gene type direction distance location
AMCG00002981 NA coding downstream 6562 8174912 ~ 8176893 (-)
AMCG00002975 NA coding downstream 135021 8045215 ~ 8048434 (-)
AMCG00002969 NA coding downstream 145384 8033455 ~ 8038071 (-)
AMCG00002972 NA coding downstream 157523 8022647 ~ 8025932 (-)
AMCG00002971 NA coding downstream 162053 8012852 ~ 8021402 (-)
AMCG00002980 NA coding upstream 2784 8198676 ~ 8203314 (-)
AMCG00002979 polr3a coding upstream 19004 8214896 ~ 8229129 (-)
AMCG00002986 zcchc24,LOC108245402,LOC104967378,LOC105029870,LOC103133498 coding upstream 309797 8505689 ~ 8508352 (-)
AMCG00002985 zcchc24,LOC107564348,LOC106577169 coding upstream 333303 8529195 ~ 8542960 (-)
AMCG00002987 NA coding upstream 374326 8570218 ~ 8570907 (-)
G139881 NA non-coding downstream 1879 8181290 ~ 8181576 (-)
G139867 NA non-coding downstream 68210 8111025 ~ 8115245 (-)
G139825 NA non-coding downstream 236934 7946052 ~ 7946521 (-)
G139752 NA non-coding downstream 724964 7455544 ~ 7458491 (-)
G139668 NA non-coding downstream 964263 7218869 ~ 7219192 (-)
G139902 rps24,LOC106591086 non-coding upstream 34477 8230369 ~ 8234284 (-)
G139937 NA non-coding upstream 298962 8494854 ~ 8495297 (-)
G139960 dlg5 non-coding upstream 421543 8617435 ~ 8618101 (-)
G140005 NA non-coding upstream 653777 8849669 ~ 8850559 (-)
G140007 NA non-coding upstream 736878 8932770 ~ 8932969 (-)
AMCG00002970 cj104,anapc16 other downstream 245214 7931166 ~ 7938241 (-)
AMCG00002945 NA other downstream 830634 7348811 ~ 7352821 (-)
AMCG00002935 LOC106589936 other downstream 1117105 7062473 ~ 7066350 (-)
G138932 NA other downstream 4180651 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 4230131 3928761 ~ 3953324 (-)
G139933 LOC108443181 other upstream 289469 8485361 ~ 8494596 (-)
G140006 NA other upstream 651140 8847032 ~ 8847840 (-)
G140015 NA other upstream 1040766 9236658 ~ 9237730 (-)
AMCG00003017 NA other upstream 1401051 9596943 ~ 9607316 (-)
AMCG00003049 NA other upstream 2105908 10301800 ~ 10331372 (-)

Expression


Co-expression Network