AMCG00002982


Basic Information

Item Value
gene id AMCG00002982
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8493005 ~ 8496965 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002982
TGCTGCTCGCCTTTCCCGCAGccctgcgctgctccaccaatgggatcgtgGCGATAcagcagatctgcgcagaatgTGTGTCACTGGACCGCGACCAGAGCTGCGCTGGAGACTGTGGGCGGACTTTAGTGACGTCACGCAGCAGCCCTCGAAGGATGCGCATCTCTGCaaaactgtgcaaaactgcgCAGGCCTCCGGAAATGTGCTGTACGTAGTACTTCCTGGATGTAGCGGCATTTCAGAAGTCGTTGGTTGCGGGATTCACGCTGCGACAATGTTGCCCTTCACAGGTCTGTTTCTTCGGTGTAATGCCGGAGGGCTGCTGAAAAGCGCCCCCCTGTCGCTGGCCGCGGCCCGGCTGTGCAGCTCCAGCCCGGTGAAAAACCCCGTGGTTTATTTTGACATCGCCGCGGACAACGAGCCTCTGGGGAGAGTCACCTTCGAGTTGAATGCTGATGTGGTCCCCAAAACAGCAGAAAACTTCCGAGTCCTCTGCACAGGAGAAATGGGCTTCGGGTACAAAGGATCGATATTCCACCGTGTGATTCCGCAGTTCATGTGCCAGGTTGAATGGGAAGCATGTCGTTTTCGGCAACGTAATGAAAGGAATGGATGTGATCTCAAAAGTGGAAAAATTAGGATCTCGATCTGGGAGCACTTCCAAGAAGATAGTCATCACCGAGTGCGGACAACTCGAATAGCTCCACTTTGATTTTCAAAACTTGTTGCAACTGTGaataaaaatacttcaaatatgtatatatttaaggtATTTCTCAAGTTTGTTTTCCACTGGCTCATGTTtagaaataacaatttaaataaatgagaaatattAGTCTTGGAGACAGGGCATTATTTACACCTTCTCTCATCTCTCCTTCAAAACTATTTAGCTGATCGCTACAGGATACCTCAAAAAGCCTctagcaaaaaatatattttccatacaAAGTTTCTCTTGAATCCTGACAAGgttgaatgtgaaatataataaacCTACTGGGAGTTGGGATCATGTCTGGGCTTTTAAAAGAATCCTGATGGTCTTATtagaagaaattaaattgtaattattatattaaagtaCATAGGAGTTTGATATTTAACACACTTGGTATTTCCTGTAACAAATCTACATTACATGAAGCCTTTGGTGTTACAcaagcatattacaaatatttttcaggCCACTTCACTGGTTTAAGAAATTAACATTGCTCCAGTTGACGAACTATATGCATGCAACCAACAACTAAAATGTCACTTGTcaattttgcttttcttctatGGATGGTACTTAATATGTTAGATTAACCAAAAGCTAAAATATAATGGAGACTTGTATTATTATCCTAGTATTATAGTGTGTTAGTTTTATGCTCACTTAacgaaaaaaaacatacttcaaaCCCAAGCTTCATTAGTGATTGCTGTGTAAATGATCCTGTGAGAAAACGAATTTATAATTTGTTGATGCCCTAAAAACTCATGGTAATTAACTGAATTTATTAGGCCTTTGTATGCTAGCCCTTGTTAATGTTTCCTGGTAGTGCTCTGACAGCTTTTTTTAGATTCTTGTTCCAGCATGGCTTCCTTCCCTCTGGTTCAGGATATGGCATCATGCTTCTGGTTTACATTTATTCATAAAACACCACATACATCAATTCAATGACCCTTGCACTTCAGTTATTCATGCACAAGCACATTTAAAGGTATGGTAAAACAATGCATATAAAAACTGTCCCAATACTGTTTTTATGAGTTCCAGGAACTCCTctaaacaatacacaaaatGAAATCCCAAGCATCTGACTGCACCGAGAAAGGAATTAGGGTGTAGCTAACTTAGTTGCTAGCAAGACAACTTTCTCTGAGCAGCTGTGTGACGcatatttaaaatggtattGATTTCACCCGGTTTGTAATGTCTGAAGCAATTGTCAATCTCACTTGTTTAGTTAGAATCTAATTGTTTACACAATTG
>TU175976
CCTTGCACTTCAGTTATTCATGCACAAGCACATTTAAAGGTATGGTAAAACAATGCATATAAAAACTGTCCCAATACTGTTTTTATGAGTTCCAGGAACTCCTctaaacaatacacaaaatGAAATCCCAAGCATCTGACTGCACCGAGAAAGGAATTAGGGTGTAGCTAACTTAGTTGCTAGCAAGACAACTTTCTCTGAGCAGCTGTGTGACGcatatttaaaatggtattGATTTCACCCGGTTTGTAATGTCTGAAGCAATTGTCAATCTCACTTGTTTAGTTAGAATCTAATTGTTTACACAATTGTCTTAATTGTCcttgatgtttctttttattgtccTTTTTTATTGTGCTACATAATTTAGGTTTGATGTAATGTATGATATGAAACACATttggcttaaaaaaacaaatataattctTTGCCTGTACACTATTTCTTAGAAAAGTCTTCCATGGGGTTTGATCTACATAGACTATTTTTCAAGACTTGCAGTTTTACGCAAGGCACTTTTGGAAAGTTACCACAGAGctgctttcatttttcttgGCACATTCTTTTGAAAAGCAGTTGTAAATACTATGTATCCTGGAAGTTTTTCTGCACATTGTTAGTTTAAAGGAGATTACTCTGATAAGAttctattttgtgtttgtttaaatctaCACACATTGgggaaatgcatgttttttgtatgtgaaTACAAAGCAAAACCTTAATTACCCTATATCATTTTTTATCATTACTTCATTCATGGATTTAAAACCAAGTGAAAGCACTTTTTTATCCGTTTGTGCAAGAACTTTTA

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002982 True 1988 mRNA 0.41 4 8493005 8496462
TU175976 False 814 lncRNA 0.33 1 8496152 8496965

Neighbor

gene id symbol gene type direction distance location
AMCG00002983 zmiz1,LOC103381918 coding upstream 5212 8476692 ~ 8487793 (+)
AMCG00002977 rps24,LOC102780737 coding upstream 258605 8229647 ~ 8234400 (+)
AMCG00002976 NA coding upstream 279910 8206391 ~ 8213095 (+)
AMCG00002973 LOC107595167 coding upstream 320501 8136740 ~ 8172504 (+)
AMCG00002974 NA coding upstream 411211 8070984 ~ 8081794 (+)
AMCG00002984 anx11,LOC100702381,LOC101468000,LOC102303799,LOC102214080,LOC102778943 coding downstream 56614 8553579 ~ 8564616 (+)
AMCG00002989 dlg5 coding downstream 87529 8584494 ~ 8635277 (+)
AMCG00002990 NA coding downstream 144950 8641915 ~ 8642438 (+)
AMCG00002991 kcnma1,LOC102213110,LOC106949528,LOC106919544,LOC107676421,LOC102314531,LOC106517014,LOC108243866 coding downstream 242773 8739738 ~ 8770076 (+)
AMCG00002992 LOC108263740,LOC103386992,LOC106613356 coding downstream 297842 8794807 ~ 8817964 (+)
G139906 NA non-coding upstream 212876 8279656 ~ 8280129 (+)
G139880 NA non-coding upstream 311471 8181305 ~ 8181534 (+)
G139850 NA non-coding upstream 471604 8020020 ~ 8021401 (+)
G139838 NA non-coding upstream 487555 8003904 ~ 8005450 (+)
G139837 NA non-coding upstream 489360 8003315 ~ 8003645 (+)
G139915 NA non-coding downstream 1049 8498014 ~ 8499226 (+)
G139916 NA non-coding downstream 2419 8499384 ~ 8507103 (+)
G139917 NA non-coding downstream 10912 8507877 ~ 8508483 (+)
G139918 LOC105903367,LOC108245402 non-coding downstream 39115 8536080 ~ 8536374 (+)
G139919 zcchc24,LOC106608383,LOC107564348 non-coding downstream 45762 8542727 ~ 8543283 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 448592 8037577 ~ 8044413 (+)
G139784 NA other upstream 566173 7923182 ~ 7926832 (+)
AMCG00002960 NA other upstream 572097 7909252 ~ 7920908 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 1113518 7376687 ~ 7379487 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other upstream 1419467 7066855 ~ 7073538 (+)
AMCG00002996 NA other downstream 739775 9236740 ~ 9244099 (+)
AMCG00002998 NA other downstream 803346 9300311 ~ 9316633 (+)
G140030 NA other downstream 828523 9325488 ~ 9330464 (+)
G140189 NA other downstream 1281285 9778250 ~ 9780452 (+)
AMCG00003019 NA other downstream 1347811 9844776 ~ 9853453 (+)

Expression


Co-expression Network