AMCG00002992 (LOC108263740,LOC103386992,LOC106613356)


Basic Information

Item Value
gene id AMCG00002992
gene name LOC108263740,LOC103386992,LOC106613356
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8794807 ~ 8817964 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002992
ACATGACCCTTTGCTCATTCCGGGAAATGAACAAATCGAGAACATGGATGTGAATGTGAAGAAATACGACTCCACAGGGATGTTTCACTGGTGCCCATCCAAAGATATTGAGAAGGTTACCCTGACTCGGAGTGAAGCTGCAATGACTGTTCTGAGCGGGCACGTGGTCGTCTGTATATTTGGAGATGTCAAGTCTGCTTTGGTGGGGCTGCGCAATCTCGTGATGCCTTTAAGAGCAAGTAACTTCCACTACCATGAGCTGaagcacattgtgtttgtgGGCTCCCTGGAATACCTGAGACGAGAATGGGAAACCCTACATAATTTCCCAAAGGTCTCCATCTTACCTGGTACGCCATTAAGTCGGGCTGATTTAAGGGCTGTCAACATCAACCTCTGCGACATGTGCGTTATCCTGTCAGCCAATCAGAACAATATCGATGATGCTTCGCTGCAGGACAAGGAATGCATCTTGGCGTCACTCAACATCAAATCTATGCAGTTTGATGACAGCATCGGGGTCTTGCAGGCTAATTCCCAAGgCTTTACACCACCTGGGATGGACAGGTCATCTCCAGACAACAGTCCAGTCCATGGGTTAGTCCGTCAGGCGTCCATAACAACGGGAGCCAATATCCCCATCATTACTGAACTAGTAAATGATTCCAATGTTCAGTTCCTGGATCAAGATGATGATGACGATCCTGACACGGAGCTGTACCTCACACAGCCTTTCGCCTGCGGAACAGCGTTTGCAGTCAGCGTGCTGGATTCCTTGATGAGTGCAACATACTTCAATGATAATATCCTCACATTGATACGGACATTAGTAACAGGGGGAGCTACACCAGAGCTGGAGGCGCTTCTGGCTGAAGAAAATGCTCTTAGAGGGGGCTACAGCACACCACAGACACTTGCAAACAGGGACAGGTGTCGTGTTGCACAGTTGGCACTGTACGATGGCCCCTTTGCGGACTTGGggGATGGTGGCTGCTATGGTGACCTGTTTTGTAAAGCATTGAAAACGTATAACATGCTGTGCTTTGGAATCTATCGATTAAGAGATGCACATCTAAATACTCCAAGTCAATGCACAAAACGgTATGTCATAACAAACCCTCCATACGAGTTTGAACTGGTCCCAACAGATCTGATCTTCTGTTTGATGCAGTTCGACCACAACGCGGGCCAGTCCAGGGCCAGTTTATCACATTCTTCTCATTCCTCCCACTCTTCCAGCAAAAAGagctcttctgttcactcaatCCCCACAGCTAACAGGCAAAACCGCAGCAAGGCCAGGGATTCCCGGGACAAACAGAAGTATAAATGGTTTACAGATGAACCAGAAAATGCCTATCcaaggaacattcaaatcaagcCCATGAGCACTCACATGGCCAATCaagtcaatcaatacaaatctaCAAGCAGCCTGATTCCACCAATCAGAGAAGTTGAAGATGAATGC

Function

NR:

description
PREDICTED: calcium-activated potassium channel subunit alpha-1 isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002992 True 1471 mRNA 0.47 9 8794807 8817964

Neighbor

gene id symbol gene type direction distance location
AMCG00002991 kcnma1,LOC102213110,LOC106949528,LOC106919544,LOC107676421,LOC102314531,LOC106517014,LOC108243866 coding upstream 24731 8739738 ~ 8770076 (+)
AMCG00002990 NA coding upstream 152369 8641915 ~ 8642438 (+)
AMCG00002989 dlg5 coding upstream 159530 8584494 ~ 8635277 (+)
AMCG00002984 anx11,LOC100702381,LOC101468000,LOC102303799,LOC102214080,LOC102778943 coding upstream 230191 8553579 ~ 8564616 (+)
AMCG00002983 zmiz1,LOC103381918 coding upstream 307014 8476692 ~ 8487793 (+)
AMCG00002994 znf503,LOC107708443,LOC103355656,LOC102798683 coding downstream 336000 9153964 ~ 9156135 (+)
AMCG00002995 NA coding downstream 450953 9268917 ~ 9273158 (+)
AMCG00002997 NA coding downstream 498767 9316731 ~ 9325141 (+)
AMCG00003002 LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875 coding downstream 676087 9494051 ~ 9508297 (+)
AMCG00003008 NA coding downstream 744316 9562280 ~ 9575635 (+)
G139919 zcchc24,LOC106608383,LOC107564348 non-coding upstream 251524 8542727 ~ 8543283 (+)
G139918 LOC105903367,LOC108245402 non-coding upstream 258433 8536080 ~ 8536374 (+)
G139917 NA non-coding upstream 286324 8507877 ~ 8508483 (+)
G139916 NA non-coding upstream 287704 8499384 ~ 8507103 (+)
G139915 NA non-coding upstream 295581 8498014 ~ 8499226 (+)
G139995 NA non-coding downstream 32215 8850179 ~ 8851686 (+)
G139997 NA non-coding downstream 102504 8920468 ~ 8920730 (+)
G139998 NA non-coding downstream 114786 8932750 ~ 8932969 (+)
G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding downstream 140775 8958739 ~ 8960425 (+)
G140002 NA non-coding downstream 328337 9146301 ~ 9146572 (+)
AMCG00002982 NA other upstream 297842 8493005 ~ 8496965 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 750394 8037577 ~ 8044413 (+)
G139784 NA other upstream 867975 7923182 ~ 7926832 (+)
AMCG00002960 NA other upstream 873899 7909252 ~ 7920908 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 1415320 7376687 ~ 7379487 (+)
AMCG00002996 NA other downstream 418776 9236740 ~ 9244099 (+)
AMCG00002998 NA other downstream 482347 9300311 ~ 9316633 (+)
G140030 NA other downstream 507524 9325488 ~ 9330464 (+)
G140189 NA other downstream 960286 9778250 ~ 9780452 (+)
AMCG00003019 NA other downstream 1026812 9844776 ~ 9853453 (+)

Expression


Co-expression Network