AMCG00002994 (znf503,LOC107708443,LOC103355656,LOC102798683)


Basic Information

Item Value
gene id AMCG00002994
gene name znf503,LOC107708443,LOC103355656,LOC102798683
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9153964 ~ 9156135 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002994
ATGATCACATCGCCCTCGATCTCTGCTCTaagaaatagtaataatagcaGTCGAGCCTGGGAAACCAGCGGCTCTGGGAATAACAGCGCCGCGACCAACATCAACAAGCCCTTCCTCCACTCCGTCCCTCCTTCGGACCCTCTAAGGCAAGCAAACCGGCTCCCGATCAAGGTGTTGAAAATGCTTACGGCGCGGACAGGACACATTTTGCACCCCGAATACTTGCAACCTCTGCCGTCGACCCCGGTTAGTCCCATTGAGttaGATGCCAAGAAAAGCCCACTGGCCCTTTTGGCACAAACGTGCTCCCAAATTGGTAAACCGGACCCCCCGCCCTCCTCCAAGCTCTCTTCAGTAACCTCGAATGGATCTAGTGACAAAGAGTCCAAATCCGGCCCTTTGAAACTGAGTGACATCGGAGTTGAAGATAAATCTAGTTTCAAACCCTACTCCAAGCCATCCGAGAAGAAGGACGCATCCTCCGGGAGCTCTGGTGGAGAGAAATCTGGTTTCCGTGTCCCTAGCGCCACCTGCCAGCCATTTACTCCAAGGACAGGCAGCCCGAATTCCAGCTCCTCCGCGTCTCCGCTGCCGTCGGAGGGCAAATCGGGAGACAGTCAGGACAAGAAAGAGTCCGACTGCAACAAAAGCAGCTCCAACGAGGGCTCTGGGACCACGAGCATCAGCCACAGCAGGATAAGCGTTAGTTGTGCTGGAATTAACGTGGAGGTCAACCAACACCAGGAGACCACCTCAGGATCCAAACCTATCACTTCAGACTCGTCATCCGTATCTTCGGCTTCCTCGGCCTCCGTTCTCGGATCTGGACTTGTAGCCCCCGTTTCCCCCTATAAGCCCGGTCAGACTGTTTTCCCACTTCCCCCTGCTGGCATGACCTACCCTGGGACCTTGGCCGGGGCCTATGCCGGCTACCCACCGCAGTTCCTGCCACACGGAGTGACTTTAGATCCAACTAAGTCTAACAGTCTAGTTAATGCACAGCTGGCCGCCGCCAGTTCACTAGGCTGCAGTAAGGCCGGATCGAGCCCTTTAGCCGGAGCCTCGCCGCCATCCATCATGTCTGCCAGCCTGTGTAGAGACCCTTACTGCTTGAGCTACCACTGCGCCAGCCACCTGGCCGGGGCGGCCAGTGCCTCCTGTACGCACGACTCTGCTGCAGCCGCGGCGCTCAAATCCGGATACCCGCTGGTCTACCCAACGCATCCCCTGCATAGCGTCCACTCCTCGCCTCCGTCTTTTGCTGGACACCCTCTCTACCCTTACGGTTTCATGCTCCCAAATGATCCCCTGCCCCACGTCTGTAACTGGGTGTCGGCCAATGGACCTTGTGATAAGCGGTTTTCCTCGTCTGAAGAACTTCTGAACCACTTGCGGACCCACACAGCTTTCACTGGGACCGAGAAACTAATCTCGGGTTACCCCAGCTCGTCCTCTTTAGCCAGTGCTGCCGCAGCAGCCATGGCATGCCACATGCACATGCCCCCCACAGGAGGCCCTGGCAGCCCCAGCACGTTGGCACTTCGGAGCCCTCACCATGCTTTAGGACTAAGCAGCCGCTACCACCCTTATTCAAAGAGCCCCTTGCCCACTCCTGGCGCCCCAGTCCCTGTACCCGCGGCCACTGGACCATATTACTCCCCTTATGCACTGTACGGACAAAGACTGACCACAGCATCAGCACTGGGATACCAGTAA

Function

symbol description
znf503 Predicted to enable metal ion binding activity. Acts upstream of or within embryonic camera-type eye morphogenesis and hindbrain development. Located in nucleus. Is expressed in several structures, including external yolk syncytial layer; mesoderm; nervous system; neural tube; and optic cup. Orthologous to human ZNF503 (zinc finger protein 503).

NR:

description
PREDICTED: zinc finger protein 503

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002994 True 1716 mRNA 0.57 2 9153964 9156135

Neighbor

gene id symbol gene type direction distance location
AMCG00002992 LOC108263740,LOC103386992,LOC106613356 coding upstream 336000 8794807 ~ 8817964 (+)
AMCG00002991 kcnma1,LOC102213110,LOC106949528,LOC106919544,LOC107676421,LOC102314531,LOC106517014,LOC108243866 coding upstream 383888 8739738 ~ 8770076 (+)
AMCG00002990 NA coding upstream 511526 8641915 ~ 8642438 (+)
AMCG00002989 dlg5 coding upstream 518687 8584494 ~ 8635277 (+)
AMCG00002984 anx11,LOC100702381,LOC101468000,LOC102303799,LOC102214080,LOC102778943 coding upstream 589348 8553579 ~ 8564616 (+)
AMCG00002995 NA coding downstream 112782 9268917 ~ 9273158 (+)
AMCG00002997 NA coding downstream 160596 9316731 ~ 9325141 (+)
AMCG00003002 LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875 coding downstream 337916 9494051 ~ 9508297 (+)
AMCG00003008 NA coding downstream 406145 9562280 ~ 9575635 (+)
AMCG00003009 LOC108263345,LOC107725471,LOC107666491,LOC107601865,LOC108426813 coding downstream 423464 9579599 ~ 9583885 (+)
G140002 NA non-coding upstream 7392 9146301 ~ 9146572 (+)
G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding upstream 193539 8958739 ~ 8960425 (+)
G139998 NA non-coding upstream 220995 8932750 ~ 8932969 (+)
G139997 NA non-coding upstream 233234 8920468 ~ 8920730 (+)
G139995 NA non-coding upstream 302278 8850179 ~ 8851686 (+)
G140156 NA non-coding downstream 574513 9730648 ~ 9730863 (+)
G140188 NA non-coding downstream 610951 9767086 ~ 9773065 (+)
G140190 NA non-coding downstream 625799 9781934 ~ 9785792 (+)
G140192 NA non-coding downstream 631612 9787747 ~ 9788069 (+)
G140223 NA non-coding downstream 782721 9938856 ~ 9960116 (+)
AMCG00002982 NA other upstream 656999 8493005 ~ 8496965 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 1109551 8037577 ~ 8044413 (+)
G139784 NA other upstream 1227132 7923182 ~ 7926832 (+)
AMCG00002960 NA other upstream 1233056 7909252 ~ 7920908 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 1774477 7376687 ~ 7379487 (+)
AMCG00002996 NA other downstream 80605 9236740 ~ 9244099 (+)
AMCG00002998 NA other downstream 144176 9300311 ~ 9316633 (+)
G140030 NA other downstream 169353 9325488 ~ 9330464 (+)
G140189 NA other downstream 622115 9778250 ~ 9780452 (+)
AMCG00003019 NA other downstream 688641 9844776 ~ 9853453 (+)

Expression


Co-expression Network