AMCG00002996


Basic Information

Item Value
gene id AMCG00002996
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9236740 ~ 9244099 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002996
GTCGTTCCTGACTGGGCGGCTGTAGCTCTTCCGGGCGCgttgttttgaatgatttattaattgtattaccaccccaaaaacaaattaaacaaatgtccTTCCATAACGTGTCCAAAGAGGCTCTGTGGGGCACTGCGGCACTCGGGGCTGTTTTTGCCGCAGGTTTATGGATTGgaAAAGGCAAATCCCAAGCTTTTGGCAGCACGACCATCTTTAAGAGTCACAGCAAAGGTGCAAAAGACAACCCCTTGATGAAGTATGTACTTGATCATTCTATGAGAGAGCACCCTGCACTGAAGAAGCTCCGACTGAAAACCCTAGAAGATCGATTCAGTGGGATGATGGTAGCTTGTGAACAATCCCAGCTGATGGCCAACCTAGCAAAGCTAATTAAAGCCAAAAAAGCACTTGAAATTGGGGTCTATACAGGGTACAATGCTTTAAATATAGCACTCACATTGCCAGAAGATGGACGAGTTGTGGCCTGTGATATCAGTGAAGCCTTACCCAACATGGGAAGGCCATTCTGGAAAGAAGCAGGAGTTGAGCACAAAATCGACCTACGGATACAGCCAGCCTTGAAAACCCTCgATGATCTTTTAGCAGCCGGTGAAGCAGAGTCCTTTGACTTTGCCTTTATCGATGCTGACAAACAGAATTATGACCATTATTATGAGAAGTGCTTGCAGCTTATTAGGAAAGGAGGAATTATAGCCATTGATAATGTGCTCTGGAGCGGAAGGGTTTTGAACCCAGAAGCAGATGATCTGGACTCGCAATGCATTGACAAGCTAAATAAGAAGATTTATAGAGATGTCAGGGTCAATGTTAGCATGCTAACTGTAGGAGATGGACTAACACTAGCATTTAAGCTCTAAATTCCAGTTTGAGGTTACATACCTTTGGCACAAATTATCCGATCGTAACTCTTCTAATTAAGGCAAACAATTCTGTGACTTTTATAAATCAGAGCTTTTGTGTCCCATATTCATCAACTGCCAAAATGGgtttcaatttttcattaaatgtttgaCATTCCAGATTaagaatttatgtattttgactACCTGGGTTGATCAGACTTTACAACACACAAATGTAGGTGTCTTCTGCTTAAACACTGCTGCAGAACTGGCTATTAGACTTCATTTTCTATCATGTTTACCAATGACTTAACACTAATTCAAACTTGAATtattaacacaaaaacatgctTCTGCAATGTAGGCTGATATTGTGCTCAACACTTTGGAGAACTTGGCATATTGGGTAGAGGTCAAAACAAACCATTGAAAAAGAAATCTTTGCAATAGTGAGTGTCCAATAGTTTGTTGTATTCTTCTCAAAGGTGCTTTGCTGCACTTTCATACTAAATATTTTTACCTTGTCTGTTATAAGTACAAAAGTATGCCTTAAATACAATGATAAAACCAATCAAATACTCTACCATGTCTAGATTTCTTAAATTGTCTCCCTCTCCTATTCAATCTTTCTTTTAGTgtacaacaaatgtatttgatatgcAGATTCTACACAGGTGTAGTCACATCACACAGGTTTCTCTGAATCCAGTCAACAGTTTTGATAATCACACCCCCTGAAAAATTATATCGATTTATTGTGCATCATACTTGGGGATGGaaacttaaaatataacttAGAGGAAATATTGGGATTTGTataacaatttcaaaatgtaccaTTAAATTACCTTATCGGTTTCTATAATGGCAAATTCAGTTAACTAATttgtacaataaaaacatttgggggggaaaaaatctgaTTGATTCACATTTGATGCTGTTCTCTTTAAACACTTGTAGTGGTGAAGTTTAACTTGAAAATGAATCCACAACAAATGTTACAGCAGTTATATAACAAATGAACTAGGCCTAAATATCAAGATGTAcaacatttgtaattataaataatgatacatgttttgtaaaataaacgtTCCCTTTCATTTACTTTAACTGACGCAAATAGGCTGTACTGATAagctaaaacaaacaatacaagtaGGCCTAccaaaaatcaataaaagaaaTGGCATAGCCTTTCTGACTTCATGTCTTTCATATTCTCAACTTGCTACTGAAATCGCGATCTATTTATGCATGCATTGGTGTATGTTGGTCTACTACAGTACAATCCAAAATATTGTTCAAAGAATACAATGGGAGTGTAAAAAAGCTTAACTAGATGGTCAAGTGCAAGTTCAAATATGCGGTTAATAGCTGTGGATTTGCAAACTAAATATCGCTGATTCTTGTGCTGCACAGCGATTTCCTATCTAAACCTTGTGATTGTCAATGTCCCACAAGGCACATGTAAGTTTATAATGCGTTTAACCGACACGGTATCTACCTGAAAAGGCATTACAAATCGGTAATATATATAGCAAGAGTTAGAATAACTGCCATATGAATCACATACCAGTGACATTTGCTTTGTAATCTACAAAGGTCGGGGCTCTGacggtaaatgtccttgagtggccttTATCATGTAGTTTTGCATCTCACCATTTCTGCATCCCatctctatttatttaattccccGGACCACctaatgtatacaaaataatattgaaaagtgtttttaaagtaatatgtgtGTTGATATAAAGCAATAGCGAAATGCATAGTTTCAGTTTGCGACATGCCCATTCCTTGTAGAAACGACCTACAATTTGTGGTGATATTCTTGGCAATGGAAACGCGTAACGCAACGAAAACTGatgtaaaaccttttttaagtACTCTTAAATTGCTGCTGCCTTTAACTCAGCAAAGTTTTCAATACTGTGCCAGGGTCCATTTTCTACTCCCGTGATGTACAGCCCCTATCCATACTGTTTTGAGTAACTGCCACAGTCAATCACAAgtatggtaaaataataaatacaataaaacaaatcaacactTCTGCATGGAAACAGGTGGttagaaataaaatcagcaAATTTACTAAACACTTCACAGATAATTTGTTCAATATGTCCATTTCCTAACGTAACCAAATTCAAATAGGTTGTCCAGAGAAATTAGGAGTGATATTTGCCAAAAATTAGTGTACTCTTTTGGCTCCACAGTGCACATTGCACGAAAGCGTCCTGGTGCCGATAAAAAAACTCATCATTTAACTCATcaaattgtcatcattttggctctttacgccaccacaatgatttgaaaagaaacaatcaagatgtgctttaagtgtatactttgatttttaattttagggtagttacatcc
>TU176111
ATCTAAACCTTGTGATTGTCAATGTCCCACAAGGCACATGTAAGTTTATAATGCGTTTAACCGACACGGTATCTACCTGAAAAGGCATTACAAATCGGTAATATATATAGCAAGAGTTAGAATAACTGCCATATGAATCACATACCAGTGACATTTGCTTTGTAATCTACAAAGGTCGGGGCTCTGacggtaaatgtccttgagtggccttTATCATGTAGTTTTGCATCTCACCATTTCTGCATCCCatctctatttatttaattccccGGACCACctaatgtatacaaaataatattgaaaagtgtttttaaagtaatatgtgtGTTGATATAAAGCAATAGCGAAATGCATAGTTTCAGTTTGCGACATGCCCATTCCTTGTAGAAACGACCTACAATTTGTGGTGATATTCTTGGCAATGGAAACGCGTAACGCAACGAAAACTGatgtaaaaccttttttaagtACTCTTAAATTGCTGCTGCCTTTAACTCAGCAAAGTTTTCAATACTGTGCCAGGGTCCATTTTCTACTCCCGTGATGTACAGCCCCTATCCATACTGTTTTGAGTAACTGCCACAGTCAATCACAAgtatggtaaaataataaatacaataaaacaaatcaacactTCTGCATGGAAACAGGTGGttagaaataaaatcagcaAATTTACTAAACACTTCACAGATAATTTGTTCAATATGTC

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008171 O-methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002996 True 3266 mRNA 0.37 7 9236740 9244099
TU176111 False 712 lncRNA 0.36 1 9243131 9243842

Neighbor

gene id symbol gene type direction distance location
AMCG00002994 znf503,LOC107708443,LOC103355656,LOC102798683 coding upstream 80605 9153964 ~ 9156135 (+)
AMCG00002992 LOC108263740,LOC103386992,LOC106613356 coding upstream 418776 8794807 ~ 8817964 (+)
AMCG00002991 kcnma1,LOC102213110,LOC106949528,LOC106919544,LOC107676421,LOC102314531,LOC106517014,LOC108243866 coding upstream 466664 8739738 ~ 8770076 (+)
AMCG00002990 NA coding upstream 594302 8641915 ~ 8642438 (+)
AMCG00002989 dlg5 coding upstream 601463 8584494 ~ 8635277 (+)
AMCG00002995 NA coding downstream 24818 9268917 ~ 9273158 (+)
AMCG00002997 NA coding downstream 72632 9316731 ~ 9325141 (+)
AMCG00003002 LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875 coding downstream 249952 9494051 ~ 9508297 (+)
AMCG00003008 NA coding downstream 318181 9562280 ~ 9575635 (+)
AMCG00003009 LOC108263345,LOC107725471,LOC107666491,LOC107601865,LOC108426813 coding downstream 335500 9579599 ~ 9583885 (+)
G140002 NA non-coding upstream 90168 9146301 ~ 9146572 (+)
G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding upstream 276315 8958739 ~ 8960425 (+)
G139998 NA non-coding upstream 303771 8932750 ~ 8932969 (+)
G139997 NA non-coding upstream 316010 8920468 ~ 8920730 (+)
G139995 NA non-coding upstream 385054 8850179 ~ 8851686 (+)
G140156 NA non-coding downstream 486549 9730648 ~ 9730863 (+)
G140188 NA non-coding downstream 522987 9767086 ~ 9773065 (+)
G140190 NA non-coding downstream 537835 9781934 ~ 9785792 (+)
G140192 NA non-coding downstream 543648 9787747 ~ 9788069 (+)
G140223 NA non-coding downstream 694757 9938856 ~ 9960116 (+)
AMCG00002982 NA other upstream 739775 8493005 ~ 8496965 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 1192327 8037577 ~ 8044413 (+)
G139784 NA other upstream 1309908 7923182 ~ 7926832 (+)
AMCG00002960 NA other upstream 1315832 7909252 ~ 7920908 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 1857253 7376687 ~ 7379487 (+)
AMCG00002998 NA other downstream 56212 9300311 ~ 9316633 (+)
G140030 NA other downstream 81389 9325488 ~ 9330464 (+)
G140189 NA other downstream 534151 9778250 ~ 9780452 (+)
AMCG00003019 NA other downstream 600677 9844776 ~ 9853453 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 1436672 10680771 ~ 10683612 (+)

Expression


Co-expression Network