AMCG00002997



Basic Information


Item Value
gene id AMCG00002997
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9316731 ~ 9325141 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00002997
ATGCTGATGGCTTTGAAAAAAGTGCAGGACAACTCTGCTGGCCAGTATGAAACACCACCAATGAGTGAACTGCAGAGGCTCTTGTACACTGCTCGAGACAAAGGCGTGCTGTTTAACCTGGGAATCACCCACATAGTCAACGCAGCAGACGGGCGATACCACGTCAACACTGGCGCTCGCTTCTACAGAGACATGCCCATCCATTACTACGGAGTGGAGGCAGATGACGACCCAGAGTTTGATCTCAGTCCTTTCTTTTATCCTACTGCCAAGTTCATACGAGCAGCTCTCTCCCAACAAGGCAAGTTTGTAAAACGTTTCCAAGTTCAAGAAATTCCATCCTGGTGTTCTTTTCCCGAGAGTTCCGgGAGGGTGTTTGTCCACTGTGCAATGGGAGTCAGCCGATCTGCCACCCTTGTGTTGGCCTTCCTAATGATCTGCGAGAACCTCACACTGGTCGACGCAATCAAGGCAGGAATGCACAGTGAAACCCTGACGGGAGAGAAGTGAAGAGCAATTCAGTCACGATCCAACAATGAGTACCTGCGGCCCAAAGcctccaaaaaagaaaaatgcttatGCCCCTGTGAAGGTAGATCCAGACATTGAATATGTCACACCTGGAGCCTTCGAAATGGAGAGACTATTCTGGCACGGGGGTGTAGCATATACACATGTCAATGAGGTGTGGCCCAATGTCTACATTGGCGATGAGAAGACGGCGTTAGACCGGTATAACCTGGAGAAGATGGGCATGACTCACATTCTCAATGCAGCCGACGGCAAGTGGAACGTGGGAACCGGGCCTGAATATTACAGCGACATCAACATCGACTACTACGGAGTTGAAGCTGAAGATATTCCTAGTTTCGACCTCAGTGTGTTCTTCTACCCTGCAGCACAATTTATCGACCATGCCCTCAGCAAACCCGAAAATAAGCTTTTGGTGCACTGCGTCATGGGAAGAAGTCGATCAGCCACACTATTTCTAGCCTATCTCATGATTTACAAGGAAATGACAGTGGTTGATGCAATTAACCATGTGATAAAACACAGGTGTATCTTACCCAACCGGGGCTTTTTAAAACAGCTCCGACAGCTCGACATTGACCTTCAgattgagaggagaaacagaaaaaatggCATCAAttcaaatgggaaataaaaggaaaaattcTTACACAATTACATGCTTTAATATTGAAAGAAGATCGTGatgtgcattttcatttgtattcagttttagttatttgtactgttcttaaaatatttgCACATCTGGTTTCTCCTCAGAGTGATAGAACCAAATTATTTTTGCTCAGAAATAGTGTGCTAATTATTTCTGTTGCAGAAATGTTTATAATATGTCATTTTTATAAAGtctataaatcattttaagtaTCTAAGCTGTGCAGAACTTTCAAAACATCAAGCAAAAGTCTTCAGTAAATTATAAATTTAAAGCATGTAGTATGCTTTTTTGGTAGTTGCAAGAGtctaatacaaatgtgtgtaaattccaattgtgcatttaattttgctACGTCATTCACCCgttttccttaaaaaataaaataaataaaaaaatataaaatgtgttcagGTAACATGTCA

Function


GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00002997 True 1614 mRNA 0.42 7 9316731 9325141

Neighbor


gene id symbol gene type direction distance location
AMCG00002995 NA coding upstream 43573 9268917 ~ 9273158 (+)
AMCG00002994 znf503,LOC107708443,LOC103355656,LOC102798683 coding upstream 160596 9153964 ~ 9156135 (+)
AMCG00002992 LOC108263740,LOC103386992,LOC106613356 coding upstream 498767 8794807 ~ 8817964 (+)
AMCG00002991 kcnma1,LOC102213110,LOC106949528,LOC106919544,LOC107676421,LOC102314531,LOC106517014,LOC108243866 coding upstream 546655 8739738 ~ 8770076 (+)
AMCG00002990 NA coding upstream 674293 8641915 ~ 8642438 (+)
AMCG00003002 LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875 coding downstream 168910 9494051 ~ 9508297 (+)
AMCG00003008 NA coding downstream 237139 9562280 ~ 9575635 (+)
AMCG00003009 LOC108263345,LOC107725471,LOC107666491,LOC107601865,LOC108426813 coding downstream 254458 9579599 ~ 9583885 (+)
AMCG00003007 NA coding downstream 304671 9629812 ~ 9633358 (+)
AMCG00003018 NA coding downstream 417297 9742438 ~ 9742839 (+)
G140002 NA non-coding upstream 170159 9146301 ~ 9146572 (+)
G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding upstream 356306 8958739 ~ 8960425 (+)
G139998 NA non-coding upstream 383762 8932750 ~ 8932969 (+)
G139997 NA non-coding upstream 396001 8920468 ~ 8920730 (+)
G139995 NA non-coding upstream 465045 8850179 ~ 8851686 (+)
G140156 NA non-coding downstream 405507 9730648 ~ 9730863 (+)
G140188 NA non-coding downstream 441945 9767086 ~ 9773065 (+)
G140190 NA non-coding downstream 456793 9781934 ~ 9785792 (+)
G140192 NA non-coding downstream 462606 9787747 ~ 9788069 (+)
G140223 NA non-coding downstream 613715 9938856 ~ 9960116 (+)
AMCG00002998 NA other upstream 98 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 72632 9236740 ~ 9244099 (+)
AMCG00002982 NA other upstream 819766 8493005 ~ 8496965 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 1272318 8037577 ~ 8044413 (+)
G139784 NA other upstream 1389899 7923182 ~ 7926832 (+)
G140030 NA other downstream 347 9325488 ~ 9330464 (+)
G140189 NA other downstream 453109 9778250 ~ 9780452 (+)
AMCG00003019 NA other downstream 519635 9844776 ~ 9853453 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 1355630 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 1429760 10754901 ~ 10756840 (+)

Expression



Co-expression Network