AMCG00003002 (LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875)


Basic Information

Item Value
gene id AMCG00003002
gene name LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9494051 ~ 9508297 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003002
ATGTGTCGTCAGTGTAAGAAGCACTGGAAGAGCGTGGTTAGCCGCTCGGTGTGTGATTACTTTTTTGAAGCCCAAGGGAAGGCCTCGGAGCTGGAGAATGTGCCCCCCGTCATCCCCTCACCTCACCACTACCTCATCAACATCTTCCGGGAGAACATCTTCTTTGTGTCTGTCATCCAGAGCGAAGTGCCGCCTCTCTTTGTCATTGAGTTCTTGCACCGAGTAGCAGAGATGTTTCAGGATTACTTTGGCGAGTGCTCCGAAGCTGCCATAAAGGACAATGTAGTTATAGTGTATGAGCTCTTAGAGGAGATGCTAGATAATGGCTTTCCTTTGGCTACAGAATCAAACATCTTGAAAGAACTGATCAGACCTCCAACAATCCTACGATCAGTTGTCAATACCATTACAGGAAGCAGTAATGTTGGGGAGACCTTACCCACTGGCCAGCTCTCCTGTATCCCATGGAGAAGGGCTGGGGTCAAGTACACCAATAACGAAGCTTActttgatgtggttgaagagatCGATGCTATTTTGGATAAATCAGGGACTACGGTATTTGCAGAAATCCAGGGTGTCATAGATGCCTGTATCAAGCTGACTGGGATGCCTGACCTCACACTGTCATTTATGAATCCCCGTCTTCTGGACGATGTGAGTTTCCACCCGAGTGTGCGCTTCAAACGCTGGGAGGCCGAGCGAGTCCTCTCCTTCATTCCCCCGGACGGCAACTTCAGACTCATGTCCTACCACGTCAGCGCCCAAAACATGGTAGCAATCCCAGTATATGTGAAGCATAATATCAATTTCCGTGAAAGCGGGTCTTGTGGAAGATTTGACGTTACCGTGGGACCCAAACAGACCATGGGAAAGATGGTGGAGGGCGTGGTTGTGACAGTGCACATGCCCAAAGTAGTGCTCAATGCCAATCTCATTGCAACCCAGGGAAACTACACTTACGACCCGGTCACTAAGATCTTAACATGGGATATTGGAAAAATTAACCCACAGAAGTTACCAAATCTGAAGGGAATGATCAGTTTACAGTCTGGAGCTCCAAGACCAGAAGAAAATCCTACTCTTAACATTCAGCTAAAAATCCAGCAGCTTGCCATTTCAGGTCTAAAAGTGAATCGTCTCGATATGTttggagaaaaatacaaacccTTCAAAGGAGTCAAATACATCACCAAAGCAGGAAAGTTCCAACCGGGTGACCTCATCCGAAGCCTTGGCAATGTCCTTGGCACACTGGATGAGGGCGCGCTTGTTTCCACTGCCGCCACGCACAAGACGGGACATTTCCGCCATCAGCAAGGCCATTCGCTTAGCTGCACCGATGATGTCATTGCCCTGGGGTGGATGACACCAGTTGAAGgctgggaggaggaggaggacgaggaggaacaagaggaggaggaaggaggaggaggggagcaTGGAGAAACAAGGAGAGAGTTAatCACAAGAATACAACAACAGTGA

Function

NR:

description
PREDICTED: AP-3 complex subunit mu-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12398 AP3M; AP-3 complex subunit mu

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003002 True 1488 mRNA 0.49 12 9494051 9508297

Neighbor

gene id symbol gene type direction distance location
AMCG00002997 NA coding upstream 168910 9316731 ~ 9325141 (+)
AMCG00002995 NA coding upstream 220893 9268917 ~ 9273158 (+)
AMCG00002994 znf503,LOC107708443,LOC103355656,LOC102798683 coding upstream 337916 9153964 ~ 9156135 (+)
AMCG00002992 LOC108263740,LOC103386992,LOC106613356 coding upstream 676087 8794807 ~ 8817964 (+)
AMCG00002991 kcnma1,LOC102213110,LOC106949528,LOC106919544,LOC107676421,LOC102314531,LOC106517014,LOC108243866 coding upstream 723975 8739738 ~ 8770076 (+)
AMCG00003008 NA coding downstream 53983 9562280 ~ 9575635 (+)
AMCG00003009 LOC108263345,LOC107725471,LOC107666491,LOC107601865,LOC108426813 coding downstream 71302 9579599 ~ 9583885 (+)
AMCG00003007 NA coding downstream 121515 9629812 ~ 9633358 (+)
AMCG00003018 NA coding downstream 234141 9742438 ~ 9742839 (+)
AMCG00003020 NA coding downstream 392970 9901267 ~ 9920544 (+)
G140002 NA non-coding upstream 347479 9146301 ~ 9146572 (+)
G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding upstream 533626 8958739 ~ 8960425 (+)
G139998 NA non-coding upstream 561082 8932750 ~ 8932969 (+)
G139997 NA non-coding upstream 573321 8920468 ~ 8920730 (+)
G139995 NA non-coding upstream 642365 8850179 ~ 8851686 (+)
G140156 NA non-coding downstream 222351 9730648 ~ 9730863 (+)
G140188 NA non-coding downstream 258789 9767086 ~ 9773065 (+)
G140190 NA non-coding downstream 273637 9781934 ~ 9785792 (+)
G140192 NA non-coding downstream 279450 9787747 ~ 9788069 (+)
G140223 NA non-coding downstream 430559 9938856 ~ 9960116 (+)
G140030 NA other upstream 163587 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 177418 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 249952 9236740 ~ 9244099 (+)
AMCG00002982 NA other upstream 997086 8493005 ~ 8496965 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 1449638 8037577 ~ 8044413 (+)
G140189 NA other downstream 269953 9778250 ~ 9780452 (+)
AMCG00003019 NA other downstream 336479 9844776 ~ 9853453 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 1172474 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 1246604 10754901 ~ 10756840 (+)
G140613 NA other downstream 1701276 11209573 ~ 11212111 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005989 ap3m1 coding NC_007124.7 CM002897.2 25199849 ~ 25209083 (+)